Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1898 ATGTCTAACTTGTTTCGCACTATCATTCTACTTAGATCTCCATCCTCTGTCTCTACTCACGGATTTTTCGTAAGTCCCTTGAAATGTCTCAGATACTTATCGACCTCTTCTGAGATTATATCATCTCCGACATCTGCCTCGTTGGTTTCTAATGTTGTTCAGCTCAAGAACAATCCGAAGGCTGTTTTCATAAAAATAAAGAACAGTCGGGAGGCTGTAATTGCGTTTCTTCAGAATCATGGATTCTCTGAATCACAAATCTCTGACCTTGCCAAGAGGGCTCCTCGAGTTCTTTCTGCGAACCCCGAGAAAATCCTATTGCCCAAATTGTTGTTTTTGCAATCTAAAGGTCTTTCTTCCCCAGAGATTGTCAAAATAATATGTTCAGTTCCTAGTGTTTTATATGGAAGTTTAGACAGACGAATTATTCCAGCCTTTGATTACATTCAAGCCGTGCTTAGAACCGAGGAGAAGACTCTCGCTGCCATAAAACGCTTTGCGGGTATTCTCACTTTTGATCTTCGAGTTTTAGTTGGTCCCAATATTGAAATTCTGAAACAAAGTGGAGTGCCGGATTCAAATATTTTAACTTATCTTCAGCGGCAGCCTAAAATGTTCTTGACAAGTTCCATCCGATTCAAGGAGATTGTGGAGAGAGTTAAGGAAATGGGATTCGATCCTCAACGATTACAGTTTGTTGTTGCTGTTTTTGCCATGCGATCAATGACCAAATCTACATGGGATAAGAAGGTTGAAGTTTATAGGAAATGGGGATTGTCTGAAGAAGAGACCCATTTAGCTTTTAGAACGCATCAATGGTGTATGGCGGTATCTGAGGATAAGATTAATGGTGCAATGGATTTTTTTGTCAACAAAATTGGATGGGAACCATCTTTGGTTGCTAGAAGATCAATTTTACTTTCACTTAGTTTGAAGAAGAGGATTTTGCCTAGAGGCTATGTTTATCAAGCTCTGCGGTCAAAGGGTTTGATTAAAAAAGGCATAAATTTCTTTATGTATTCTGATAATCTTTTCATAGACAAATTCATCAAACCTCATAAGGAGCAGATTCCTGGATTGTTGGAGTTGTATGAAGAGAAATTAATGGATTCTAGAAGATGA 1122 38.59 MSNLFRTIILLRSPSSVSTHGFFVSPLKCLRYLSTSSEIISSPTSASLVSNVVQLKNNPKAVFIKIKNSREAVIAFLQNHGFSESQISDLAKRAPRVLSANPEKILLPKLLFLQSKGLSSPEIVKIICSVPSVLYGSLDRRIIPAFDYIQAVLRTEEKTLAAIKRFAGILTFDLRVLVGPNIEILKQSGVPDSNILTYLQRQPKMFLTSSIRFKEIVERVKEMGFDPQRLQFVVAVFAMRSMTKSTWDKKVEVYRKWGLSEEETHLAFRTHQWCMAVSEDKINGAMDFFVNKIGWEPSLVARRSILLSLSLKKRILPRGYVYQALRSKGLIKKGINFFMYSDNLFIDKFIKPHKEQIPGLLELYEEKLMDSRR 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4901414 4902889 + PI0028421.1 Cmetu06g1898 359560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1898 373 SMART mt_12 196 226 IPR003690 GO:0003690|GO:0006355
Cmetu06g1898 373 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Cmetu06g1898 373 SMART mt_12 160 191 IPR003690 GO:0003690|GO:0006355
Cmetu06g1898 373 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Cmetu06g1898 373 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Cmetu06g1898 373 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Cmetu06g1898 373 Pfam mTERF 169 333 IPR003690 GO:0003690|GO:0006355
Cmetu06g1898 373 Pfam mTERF 75 232 IPR003690 GO:0003690|GO:0006355
Cmetu06g1898 373 FunFam Mitochondrial transcription termination factor-like 138 357 - -
Cmetu06g1898 373 Coils Coil 361 373 - -
Cmetu06g1898 373 Gene3D Transcription termination factor 3, mitochondrial 155 358 IPR038538 -
Cmetu06g1898 373 PANTHER CGI-12 PROTEIN-RELATED 41 355 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1898 K15031 - - csv:101204411 508.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1069 Cmetu-Chr1:8179460 Cmetu06g1898 Cmetu-Chr6:4901414 4.10E-100 dispersed
Cmetu06g1898 Cmetu-Chr6:4901414 Cmetu06g2611 Cmetu-Chr6:4892478 2.50E-160 dispersed
Cmetu06g2272 Cmetu-Chr6:4898438 Cmetu06g1898 Cmetu-Chr6:4901414 7.70E-130 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g337 . . . Bda08g00283 . Bpe14g01137 . Bma05g01055 Cmo08g01188 . Cma06g01484 Cma14g01633 . . . . . . . . . . . . Cla06g00494 Cam06g0531 Cec06g0531 Cco06g0535 Clacu06g0515 Cmu06g0517 Cre06g1288 Cone11ag0062 Cone18ag1417 . . Lsi05g01523 . . Cme06g00711 Blo02g00516 Blo07g00180 Bda11g00534 Bda13g00173 Bpe05g00845 Bpe13g00655 . Bma06g01511 Sed02g1207 . Cmo14g01671 Cma08g01215 . Car08g01086 . . . Bhi12g02086 Tan06g0862 Cmetu06g1898 . . . Lcy13g0191 Cla05g00633 Cam05g0694 Cec05g0705 Cco05g0701 Clacu05g0689 Cmu05g0656 Cre05g0727 Lsi09g01413 Csa03g01436 Chy06g00675 .
Vvi7g235 . . . . . Bpe06g00507 . . . Cmo17g01092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma09g00725 . Sed02g1207 . . . Cma17g01117 . Car17g01055 . Cpe12g00960 Bhi12g02086 Tan06g0862 Cmetu06g1898 . . . Lcy13g0191 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000251 8 3 2 6 4 3 3 5 5 12 2 3 4 4 8 6 2 8 2 4 10 4 4 7 4 5 2 16 4 6 156
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8118 PF02536 mTERF 9.20E-17 No_clan Cmetu TR