Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1959 ATGGCGGAAGGGGAATTTACCGATCAGAATCGTCTTCTTAGATCTATGGAGGATCATAATGAGGAAGATCATGATTTAGAATCGCAAGATGGAAATGGAGTTCATCCATTGAGAAATAGCAGTGGAAAACGAGGTGGGTTTCTGGATCTGCTTCATCATCTCAATCGAGGGAGCAGTTTCTCTGGTCGTCGTTTAAGTTATAAGCGTCTTGATATGGATAATCATAACGTTAATTTCAACCCTTCTTCTGTTAATATTGTTGGTAGAAGTCGTACGGGTTCTTCTTCTTCTTCTTCTGATCGTCACAACAATTTCAATTCGTATTCTCTTCATAGTCCAACTGCAATTGATGGCGAAATTGATGACAATGGCGATGATACTGCCCCTCCTGAATGGGCTTTGTTGCTTATTGCTTGTCTTCTTGGCCTCGCCACCGGTCTTTGTGTTGCAGCTTTTAACATTGGGGTACATGTAATCCATGAGTGGGCTTGGGCTGGCACTCCAAATGAGGGTGCTGCTTGGCTTCGGTTACAGAGAATGGCTGATACTTGGCATCGCATTCTCTTGATACCGGTGTGTGGAGGTGTTATAGTGGGGATGATGCATGGTTTGCTTGAGATACTCAGCCAAATAAAACAGTCAAGTGCTTCTCAAGGACAAGGATTTGATTTGCTTTCTGGAGTCTTTCCTACGGTTAAAGCCATACAGGCAGCCATCACTTTAGGTACTGGCTGTTCGTTGGGTCCTGAAGGACCTAGTGTAGATATTGGAAAATCATGTGCCAATGGATTCTATCTTATGATGGAAAACAACAGTGAAAAGATAAAAATAGCATTTGTTGCAGCTGGTGCAGCAGCGGGAATTGCTTCAGGCTTCAATGCAGCTGTCGCTGGTAGCTTCTTTGCAATAGAAACTGTATTGAGGCCTCTGCGTGCAGAAAATTCACCTCCTTTTACAACTGCAATGATCATACTGGCATCTGTTATCTCATCTACAGTCTCAAATGTTTTACTTGGGACACAGTCTGCTTTCACAGTACCTACGTATGATTTGAAATCTGCTGCTGAACTCCCACTGTACTTGATATTAGGAATGCTATGTGGTGCTGTAAGTGTAGCAGTGACACGTTTGGTTGCTTGGTTCGGTAAATCATTTGAGTTCATCAAGGAAAGGTTTGGCCTTCCTCCCGTTGTCTGTCCTGCTTTAGGCGGTTTGGGAGCTGGGATAATAGCTCTCAAGTACCCTGGGATTCTTTATTGGGGTTTCACAAACGTGGAGGAAATCCTACATACTGGGAATCGTCCTTCAGCTCCCGGGATTTGGTTATTAACTCAAATAGCAGCTGCAAAAGTTGTGGCTACAGCTCTGTGTAAGGGTTCTGGGCTCGTAGGTGGCCTTTATGCACCTAGTCTAATGATTGGTGCAGCTGTTGGTGCGGTATTTGGGGGCTCAGCTGTTGAAATCATTAATATTGCAATTCCTGGAAATGCAGCTGTCGCACAGCCACAAGCATATGCACTGGTTGGGATGGCTGCTACGCTGGCCTCAGTCTGTTCAGTGCCTTTAACATCCGTTCTACTTCTGTTTGAGCTGACAAAGGATTATAGGATACTCCTTCCTCTAATGGGGGCCGTAGGCTTAGCCATATGGGTTCCTTCAGTTACAAAACAGACCAAGGAAAATGAGTCATCCGATAAGCGGGGTCTTGCGAGAGGTTATACTTCTCTTTCACCATCTGAACGTAAAGATGGAGCATCTTGGAGATATGATAATGGTGGCAATGACTTGGAGCTCTCTGAGGTAGTAAATCCATCCGGCCATGAATCTAATTATGAAGATAATCTTCTCGAAGACCTAAAGGTTTCTCAAGCAATGTCAAAAAACTATCTGAAGGTTTCATTGTCTACATATTTGAAAGATGCACTTAAATATATGAAGGATAACCAGCAGAACTGTGCATTAGTGGTTGACGATGATGATTTCCTTGAGGGGATCTTGACACATGGTGACATTAAACGATATCTCTTCAAGAAGTATGGTGATGCTTTCATGGGTGATTCACTGAGTGTGGATACCTGTCTTGTGTCCTCTATTTATACTCGAGGAATCAGTTATCGTGGTCGAGAACGGGGGATCTTGACATGTTATCCTGACACTGCTCTGGCAACTGCCAAGGAACTAATGGAGGCTAAGGGTATAAAGCAGTTACCTGTTGTTAAGCGTGGTAAAGAAAAGAAAAGAAGAATTGTAGCCATTCTCCACTACAACTCACTTTTTAGCTGTCTCAGAGAGTTCGTCAATCAAAAGGAAACAGTATATCCTAGTGGAAAAGAGATAGTTGTCCAGGAGAATGTTGCTGATGGTCATTAA 2370 43.42 MAEGEFTDQNRLLRSMEDHNEEDHDLESQDGNGVHPLRNSSGKRGGFLDLLHHLNRGSSFSGRRLSYKRLDMDNHNVNFNPSSVNIVGRSRTGSSSSSSDRHNNFNSYSLHSPTAIDGEIDDNGDDTAPPEWALLLIACLLGLATGLCVAAFNIGVHVIHEWAWAGTPNEGAAWLRLQRMADTWHRILLIPVCGGVIVGMMHGLLEILSQIKQSSASQGQGFDLLSGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLMMENNSEKIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPTYDLKSAAELPLYLILGMLCGAVSVAVTRLVAWFGKSFEFIKERFGLPPVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGNRPSAPGIWLLTQIAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAVEIINIAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQTKENESSDKRGLARGYTSLSPSERKDGASWRYDNGGNDLELSEVVNPSGHESNYEDNLLEDLKVSQAMSKNYLKVSLSTYLKDALKYMKDNQQNCALVVDDDDFLEGILTHGDIKRYLFKKYGDAFMGDSLSVDTCLVSSIYTRGISYRGRERGILTCYPDTALATAKELMEAKGIKQLPVVKRGKEKKRRIVAILHYNSLFSCLREFVNQKETVYPSGKEIVVQENVADGH 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27419830 27427983 - PI0009564.1 Cmetu06g1959 359621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1959 789 FunFam Chloride channel protein 122 567 - -
Cmetu06g1959 789 ProSiteProfiles CBS domain profile. 625 683 IPR000644 -
Cmetu06g1959 789 Gene3D - 605 764 IPR046342 -
Cmetu06g1959 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 625 758 - -
Cmetu06g1959 789 Pfam CBS domain 621 676 IPR000644 -
Cmetu06g1959 789 Pfam CBS domain 711 759 IPR000644 -
Cmetu06g1959 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 41 771 - -
Cmetu06g1959 789 MobiDBLite consensus disorder prediction 81 104 - -
Cmetu06g1959 789 ProSiteProfiles CBS domain profile. 708 771 IPR000644 -
Cmetu06g1959 789 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmetu06g1959 789 PRINTS Chloride channel signature 233 252 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmetu06g1959 789 PRINTS Chloride channel signature 285 304 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmetu06g1959 789 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmetu06g1959 789 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmetu06g1959 789 SMART cbs_1 711 763 IPR000644 -
Cmetu06g1959 789 SMART cbs_1 628 676 IPR000644 -
Cmetu06g1959 789 Gene3D Clc chloride channel 124 570 - -
Cmetu06g1959 789 SUPERFAMILY CBS-domain pair 615 761 IPR046342 -
Cmetu06g1959 789 CDD Voltage_gated_ClC 145 548 - -
Cmetu06g1959 789 MobiDBLite consensus disorder prediction 560 588 - -
Cmetu06g1959 789 SUPERFAMILY Clc chloride channel 130 555 IPR014743 -
Cmetu06g1959 789 MobiDBLite consensus disorder prediction 20 41 - -
Cmetu06g1959 789 Pfam Voltage gated chloride channel 221 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1959 K03281 - - csv:101212254 1464.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1959 Cmetu-Chr6:27419830 Cmetu11g2353 Cmetu-Chr11:18048996 9.60E-101 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43