Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g1995 ATGTCAGCTTTATCTAGAGGTCTCATTTCTCGTTTTCGTATTCTCTCGATCAATTCCGGCGCTTCTCATTCAATTACTTCTTCTTCTCCTTCTTCTTCTTCAAGGACAAATGCGTCCTGTTACTACTTCTTCCGTGCTTTCAGTACCCAGGATTTAACTCAGGCTAGCGATGGGTCTTTGCCAGCTTCTTCGATTATTGAAGCTAAACCTCGTACCATGAGCAGTAACTCTACGCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGTTGTGGGATAAATGGGGAGCTAGGATACCCATCACTGTGCTCTGGGTTGATGATAATATCGTGTCTCAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTACAGATTGGCTGTGGACAGAAGAAGGAAAAGCATTTGAGTAAACCTGAATTAGGCCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAGCTGAGGGAGTTCCCAGTGTCACAAGATGCACTTCTTCCAGTTGGTACAGAAATTGGCGCTCGCCATTTTGTTCCTGGACAGTATGTCGATGTGACAGGAACAAGTAGAGGGAAAGGTTTTCAGGGAGTGATGAAAAGGCATGGTTTCAAAGGAATGCCTGCATCCCACGGAGCATCATTATCTCATAGGAGCGGTGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTTTTCAAAGGCAGAAAGATGGCTGGGCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGATATACAAAATTGATGCTGCAAGGAACTTGATATGGGTGAAAGGACCAATCCCCGGCGCTGAAGGAAGCTTTGTATTTATAAAAGATGCCATGCACAAGAAACTCAATAAGTCGGCAATCCTTCCATTTCCTACGTACTTTGCAACCGATGGTGAGGACACAGACAAGTTGGAACCTCTTGTTGCTGATCTTGGAGAAGTAGATCCATTTATGATTGGAGATTGA 987 45.49 MSALSRGLISRFRILSINSGASHSITSSSPSSSSRTNASCYYFFRAFSTQDLTQASDGSLPASSIIEAKPRTMSSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGARHFVPGQYVDVTGTSRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKIDAARNLIWVKGPIPGAEGSFVFIKDAMHKKLNKSAILPFPTYFATDGEDTDKLEPLVADLGEVDPFMIGD 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5772533 5777139 - PI0009309.1 Cmetu06g1995 359657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g1995 328 PANTHER 50S RIBOSOMAL PROTEIN L3 54 325 IPR019927 GO:0003735|GO:0005840|GO:0006412
Cmetu06g1995 328 ProSitePatterns Ribosomal protein L3 signature. 179 202 IPR019926 -
Cmetu06g1995 328 FunFam 50S ribosomal protein L3 109 174 - -
Cmetu06g1995 328 Gene3D - 111 174 - -
Cmetu06g1995 328 SUPERFAMILY Translation proteins 71 305 IPR009000 -
Cmetu06g1995 328 Hamap 50S ribosomal protein L3 [rplC]. 79 285 IPR019927 GO:0003735|GO:0005840|GO:0006412
Cmetu06g1995 328 NCBIfam 50S ribosomal protein L3 81 282 IPR019927 GO:0003735|GO:0005840|GO:0006412
Cmetu06g1995 328 FunFam 50S ribosomal protein L3 206 287 - -
Cmetu06g1995 328 MobiDBLite consensus disorder prediction 208 232 - -
Cmetu06g1995 328 Gene3D Translation factors 202 288 - -
Cmetu06g1995 328 Pfam Ribosomal protein L3 176 260 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g1995 K02906 - - csv:101205048 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1995 Cmetu-Chr6:5772533 Cmetu11g2173 Cmetu-Chr11:431759 5.70E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g260 . Blo12g00372 Bda03g00838 . Bpe04g00793 . Bma04g00736 . . . . . Car06g01348 . Sed02g1104 Cpe08g00132 . Bhi01g01131 Tan10g1125 Cmetu06g1995 . Hepe05g1343 . Lcy11g1303 . . . . . . . Cone14ag0677 Cone15ag0688 . . Lsi05g01384 . . Cme06g00832 . . . . . . . . . Cmo06g01582 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011772 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 3 1 1 30