Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2001 ATGGGGATGATGAGATCAATAGTAATAATAGGCCATGGGTTTGCAGCTTCAATGTTGATTATTGGTGGTGTGATGTTGTTGTTTGATGGATTTAAAGTATGTGAAGCAAAATCATCTGAATTGGTGACTTATGTATTTGGGGATTCATTAACTGAGGTTGGAAACAACAATTTTTTGAATTCACTAGCAAGGTCTGATTATCCATGGTATGGGGTTGATTATAATGGTGGTCAACCAACTGGAAGATTCACTAATGGAAGAACCATTGGAGATATTATATCTGAAAAGCTTGGAATTGAACCGCCACCTCCGTATCTATCACTTTCCAAAGATGACGATAAACTCATTCATGGCGTCAATTACGCTTCCGGCGGAGCAGGAATTCTCAACGACACCGGACTCTATTTTATCCAAAGAATGACATTCGACGATCAAATCGAGAGTTTCTACCAAACAAAGAAAGCAATAGCGAGGAAAATCGGGGAAGAGGCTGCTCTTAAACATTGCAATCAAGCCATGTATTTCATTGGAATTGGTAGCAATGATTATGTGAACAATTTCTTACAACCATTTTTGGCGGATGGACAGCAATATACCCATGAGGAATTCTTGGACCTTTTGCTCTCTACATTCCAACGACAACTTACAAGGCTTTACCAATTGGGTGCAAGGAAAATGGTGGTACATGGGGTAGGGCCATTGGGATGCATTCCTTCACAAAGAGTGAAATCAAGAAAAGGGCAATGCCTAAAGAGAGTTAACCAATGGGTTCAAGATTTCAACTCCAAAGTCCAAACACTCACAACAAATCTCAACAACAACCTTCCAAATTCACATCTTCTCTTTGCAGATACCTATCCTCTTGTTCTTGACCTCATCACCAACCCTTCCGCTTACGGTTTCAAAGTATCAAATACATCTTGTTGCAATGTGGACACAAGCATTGGAGGGCTTTGTTTGCCAAACTCAAAACTATGCAAAAATAGAAGAGAGTATGTGTTTTGGGATGCCTTTCATCCTTCTGATGCTGCCAATGCTGTTTTGGCTAATAAACTCTTTTCAACTTTATTCTCTTCTTTTTCTTCTTCTTCTTCTCCCACACCCTCTCCTTTGCCTTCCCCTTAA 1125 39.91 MGMMRSIVIIGHGFAASMLIIGGVMLLFDGFKVCEAKSSELVTYVFGDSLTEVGNNNFLNSLARSDYPWYGVDYNGGQPTGRFTNGRTIGDIISEKLGIEPPPPYLSLSKDDDKLIHGVNYASGGAGILNDTGLYFIQRMTFDDQIESFYQTKKAIARKIGEEAALKHCNQAMYFIGIGSNDYVNNFLQPFLADGQQYTHEEFLDLLLSTFQRQLTRLYQLGARKMVVHGVGPLGCIPSQRVKSRKGQCLKRVNQWVQDFNSKVQTLTTNLNNNLPNSHLLFADTYPLVLDLITNPSAYGFKVSNTSCCNVDTSIGGLCLPNSKLCKNRREYVFWDAFHPSDAANAVLANKLFSTLFSSFSSSSSPTPSPLPSP 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14818677 14823782 - PI0015386.1 Cmetu06g2001 359663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2001 374 CDD SGNH_plant_lipase_like 44 351 IPR035669 -
Cmetu06g2001 374 SUPERFAMILY SGNH hydrolase 42 356 - -
Cmetu06g2001 374 Gene3D SGNH hydrolase 36 359 IPR036514 -
Cmetu06g2001 374 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 39 358 - -
Cmetu06g2001 374 Pfam GDSL-like Lipase/Acylhydrolase 44 351 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2001 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0456 Cmetu-Chr2:11892739 Cmetu06g2001 Cmetu-Chr6:14818677 4.60E-63 dispersed
Cmetu06g1867 Cmetu-Chr6:26389412 Cmetu06g2001 Cmetu-Chr6:14818677 2.00E-61 dispersed
Cmetu06g2001 Cmetu-Chr6:14818677 Cmetu12g0945 Cmetu-Chr12:3480125 1.60E-74 dispersed
Cmetu02g2003 Cmetu-Chr2:23706007 Cmetu06g2001 Cmetu-Chr6:14818677 4.50E-54 transposed
Cmetu05g0435 Cmetu-Chr5:22889949 Cmetu06g2001 Cmetu-Chr6:14818677 9.00E-24 transposed
Cmetu06g1549 Cmetu-Chr6:5466073 Cmetu06g2001 Cmetu-Chr6:14818677 6.10E-74 transposed
Cmetu09g1940 Cmetu-Chr9:1119265 Cmetu06g2001 Cmetu-Chr6:14818677 7.10E-62 transposed
Cmetu11g2026 Cmetu-Chr11:29568864 Cmetu06g2001 Cmetu-Chr6:14818677 6.90E-73 transposed
Cmetu01g0630 Cmetu-Chr1:11412132 Cmetu06g2001 Cmetu-Chr6:14818677 6.90E-39 wgd
Cmetu04g1634 Cmetu-Chr4:15118450 Cmetu06g2001 Cmetu-Chr6:14818677 2.10E-37 wgd
Cmetu05g0032 Cmetu-Chr5:14085400 Cmetu06g2001 Cmetu-Chr6:14818677 9.80E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g560 . . . Bda15g00606 Bpe12g00544 . . . . . Cma10g00195 . Car10g00185 . Sed08g0218 . . Bhi02g00312 Tan09g2118 Cmetu06g2001 . Hepe09g0115 . . Cla06g01589 Cam06g1758 Cec06g1814 Cco06g1817 Clacu06g1724 Cmu06g1667 Cre06g2481 . . Cone13ag0068 Cone19ag0069 . . . . Blo13g00006 . . . . . . Bma08g00223 . Cmo10g00210 . . . . . . Cpe18g00790 . . . . . . . . . . . . . . Lsi06g01461 Csa01g00238 Chy02g02494 Cme02g01880
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014009 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 24