Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2009 ATGGAAAAAGAAGTGAAGGTCCATGGAAGTTGGGCAAGTCCTTTCAGCCACAGAGTGATTTGGGCTCTCCAACTCAAACGCATTCCCTACCACTTCATTGAAGAAGATTTGACCAACAAAAGCCCTTTGCTCCTACATTACAATCCCCTCTACAAGAAGATTCCAGTGCTCGTCCATGCCGGAAACCCTATCTGCGAATCTGCCGTCATCCTCGAGTACATCGACCACACTTGGCCGGAAAACCCCCTGTTGCCGTCCGATCCTTATGACAGAGCCACCGCTCGTTTCTGGATCAAATTCATTCAGGATAAGGAAGCGTTGATATTTAGGAGGATTTTTACAGCGAGAGTGGAAGAGCAAGAGCAAGCAAGGAAAGAGAGCCTGGAAGTGCTGAGGACGATCGAGGAGCGAGGCCTCAACGGCGGTGAGTTCTTCGGGGGAGATGAGATCAATATGGTTGATTTGGTGTACGGATGGATAGCAGTGTGGATGAAGGTTTTTGAAGAAGTTATGGATATGAAAATAATGGAAGACCTTGAATTCCCTCGCCTCCAAGCTTGGATGGAGAATTTCAAAGCTGTCACCGTTATCAGAGATCACATTCCCGATCATCATCAAATGGTCCTCCATCTCCGCCGTCGCGCCAACAAAACTGCTTCAATCTCCCCTAAACTAGGAAATGCTGCAAATCTAGAAGAGAAAGACGTCGACGAGTGA 717 47.7 MEKEVKVHGSWASPFSHRVIWALQLKRIPYHFIEEDLTNKSPLLLHYNPLYKKIPVLVHAGNPICESAVILEYIDHTWPENPLLPSDPYDRATARFWIKFIQDKEALIFRRIFTARVEEQEQARKESLEVLRTIEERGLNGGEFFGGDEINMVDLVYGWIAVWMKVFEEVMDMKIMEDLEFPRLQAWMENFKAVTVIRDHIPDHHQMVLHLRRRANKTASISPKLGNAANLEEKDVDE 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2936446 2937329 + PI0029020.1 Cmetu06g2009 359671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2009 238 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 211 IPR010987 -
Cmetu06g2009 238 FunFam Tau class glutathione S-transferase 1 86 - -
Cmetu06g2009 238 Coils Coil 117 137 - -
Cmetu06g2009 238 SFLD Main.3: Omega- and Tau-like 2 220 IPR045073 -
Cmetu06g2009 238 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Cmetu06g2009 238 Pfam Glutathione S-transferase, C-terminal domain 121 189 - -
Cmetu06g2009 238 Gene3D Glutaredoxin 1 83 - -
Cmetu06g2009 238 CDD GST_C_Tau 88 214 IPR045074 GO:0004364|GO:0006749
Cmetu06g2009 238 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 207 IPR045073 -
Cmetu06g2009 238 CDD GST_N_Tau 5 78 - -
Cmetu06g2009 238 Pfam Glutathione S-transferase, N-terminal domain 5 75 IPR004045 -
Cmetu06g2009 238 Gene3D - 84 221 - -
Cmetu06g2009 238 SUPERFAMILY Thioredoxin-like 4 103 IPR036249 -
Cmetu06g2009 238 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cmetu06g2009 238 FunFam Tau class glutathione S-transferase 84 221 - -
Cmetu06g2009 238 SFLD Glutathione Transferase (cytosolic) 2 220 IPR040079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2009 K00799 - - csv:101207634 280.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1096 Cmetu-Chr6:2925556 Cmetu06g2009 Cmetu-Chr6:2936446 4.00E-76 dispersed
Cmetu06g1243 Cmetu-Chr6:2928023 Cmetu06g2009 Cmetu-Chr6:2936446 1.20E-63 dispersed
Cmetu06g1660 Cmetu-Chr6:2932837 Cmetu06g2009 Cmetu-Chr6:2936446 6.20E-54 dispersed
Cmetu06g2009 Cmetu-Chr6:2936446 Cmetu08g0998 Cmetu-Chr8:15633114 1.00E-45 dispersed
Cmetu06g2009 Cmetu-Chr6:2936446 Cmetu06g1031 Cmetu-Chr6:2938192 6.40E-101 tandem
Cmetu06g2456 Cmetu-Chr6:2934526 Cmetu06g2009 Cmetu-Chr6:2936446 6.50E-69 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g815 . . . . . . . . . . Cma06g01278 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 . . . . . . . . . . . Lsi05g01791 . . Cme06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01147 Chy06g00411 .
Vvi15g85 . . . . . . . . . . Cma06g01277 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 Cla05g00265 Cam05g0289 Cec05g0289 Cco05g0297 Clacu05g0286 Cmu05g0272 Cre05g0336 . . . . Lsi05g01929 . . Cme06g00291 . . . . . . . . . Cmo06g01186 . . . . . . . . . . . . . . . . . . . . . . Csa03g00999 Chy06g00270 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120