Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2044 ATGGAGGTCGACGATCGCTTTGTTGAATTGAATACCAAGACCTGCGTCGTGTTGGGCGGCCGTGGATTTCTCGGCCGATCGTTGGTTCTCCGCCTCCTCAAACTCGGCAAGTGGAATGTTCGTATCGCTGATTCTGCTAACTCGCTTGAACTTGATCCATCTGAGCATGACTCTCTCCTTTCTGACGCGCTTATCGCTGGCCGGGCTTCGTATTTTCATGTCGATGTTCGCAATAAGGATCAGATCTTTGCAGCTCTTAGTGGTTCTTCTGTCGTGTTTTATATGGACTATGAAGATTCACATTCCAATGATATTTATCTCTCATACATGTTTATAGTTCAAGGTGCCAAAAATGTCATTAATGCTTGTCGAGACTGCAAAGTAAGACGGCTAATATTCAACAGTTCAGCTGATGTAATTTTTGATGGGTCACGTGATATACTTAATGGAGAGGAATCATTAACATACCCATGGAAATTTGAGGACATGTTGAGTGACCTAAAGGCTCAAGCTGAAGCACTCATTCTGTTTGCCAACAATATAGATGGACTTCTAACATGTGCACTTCGCCCTAGCAATGTTTTTGGGCCAGAAGACACCCGACTTGTTCCTTTCGTAGTGCATCAGGCAAAATCTGGTTTGGCAAAGTTCATTATAGGGAATGGTGAAAACATGTCTGACTTCACATTTGTTGAGAATGTGACCCATGCCCATATCTGTGCAGAAGAAGCACTAGATTTTCGAATGGTGTCTGTGGCTGGAAAGGCATTTTTCATCACTAATTTTAAGCCCATGAAGTTTTGGGAATTTACATCTATCATTTTGGAAGGCTTGGGTTACCGAAGGCCATCAGTAAAACTTCCATTTAAGGTGGTTTGGAATGTTCTCTTGTTTATGAAATGGATTGATGAAAAGTTTGGATTCGATAAATATAATCATTCCACGTGGGCTCATTACATTCAGCTAGCCTCGTGCACTAGAACCTTTAACTGTGCTGCTGCACATAAACAACTTGGTTACTCTCCTGTAGTCTCGTTGGAAGAAGGCATCACACTAACCATTAAATCATTTTCACATTTGCGCAAAGAATTGTCTCTTGCAAGTTTCACTGAATTTACTGAAGAATCAAAAGCTGATAAGCTACTGGGTGGTGGACGAGTTGCTGATGTATTGTTATGGCGAGATGAGAAAAAATCATTCACTTGTTTTCTTGCTTCGTCTCTATTGTTTTATTGGTTTTTTATACGTGGAGGAACTTTTATATCATCAGCTGCTCAACTTCTGTTGTCCATCATTGTCGTCCTTTATGGATATGGGTTCATACCACCAAACATATACGGGTTTCCTGTTCAAAAACTATCTGTGACAGCGTTTCGACAATCTGACTCAGTAGTAAGAGATTCAATCATGACCCTAGCATGCTTGTGGAATAGAGGTGTACATAACGCAAGAGCATTGGCCCGAGGAGAGGATTGGAACTATTTTCTTAAGGCCGTTGCATTTCTTTATCTTCTCAAGCTGCTACTCGCACGATCCTTGACTATGCTGTTAGGCATGGGACTAGTGTTTGCGTTCACTGCATTCTTTGTATATGAGCAATATGAAGCCGAGATAGACGAATTTGCAAAGTTCTTTTTCATCGGCATCATGGAATTAAAGAGACTACTTGCTAGCCATTTACCAACACCATTGATGTCATTTCTCTGTTGTGACAGAGTACCACATCAACCTACAGTGTCAAAGCGATAG 1749 41.4 MEVDDRFVELNTKTCVVLGGRGFLGRSLVLRLLKLGKWNVRIADSANSLELDPSEHDSLLSDALIAGRASYFHVDVRNKDQIFAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGAKNVINACRDCKVRRLIFNSSADVIFDGSRDILNGEESLTYPWKFEDMLSDLKAQAEALILFANNIDGLLTCALRPSNVFGPEDTRLVPFVVHQAKSGLAKFIIGNGENMSDFTFVENVTHAHICAEEALDFRMVSVAGKAFFITNFKPMKFWEFTSIILEGLGYRRPSVKLPFKVVWNVLLFMKWIDEKFGFDKYNHSTWAHYIQLASCTRTFNCAAAHKQLGYSPVVSLEEGITLTIKSFSHLRKELSLASFTEFTEESKADKLLGGGRVADVLLWRDEKKSFTCFLASSLLFYWFFIRGGTFISSAAQLLLSIIVVLYGYGFIPPNIYGFPVQKLSVTAFRQSDSVVRDSIMTLACLWNRGVHNARALARGEDWNYFLKAVAFLYLLKLLLARSLTMLLGMGLVFAFTAFFVYEQYEAEIDEFAKFFFIGIMELKRLLASHLPTPLMSFLCCDRVPHQPTVSKR 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6086378 6095531 - PI0022223.1 Cmetu06g2044 359706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2044 582 Gene3D - 6 362 - -
Cmetu06g2044 582 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 16 288 IPR002225 GO:0003854|GO:0006694|GO:0016616
Cmetu06g2044 582 Pfam Reticulon 387 543 IPR003388 -
Cmetu06g2044 582 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 360 IPR036291 -
Cmetu06g2044 582 ProSiteProfiles Reticulon domain profile. 387 582 IPR003388 -
Cmetu06g2044 582 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 13 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2044 K23558 - - csv:101212494 1077.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1267 Cmetu-Chr3:6141156 Cmetu06g2044 Cmetu-Chr6:6086378 5.90E-113 dispersed
Cmetu06g2044 Cmetu-Chr6:6086378 Cmetu09g0932 Cmetu-Chr9:1640571 5.90E-07 dispersed
Cmetu06g2044 Cmetu-Chr6:6086378 Cmetu12g1200 Cmetu-Chr12:1389670 3.20E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1274 . . . . . . . . . . . . Car06g01373 . Sed12g0690 . . Bhi01g01193 Tan10g1204 Cmetu06g2044 . Hepe05g1297 . Lcy11g1256 . . . . . . . . . . Cone11ag0658 . . . . . Blo07g00114 . . . . . Bma06g01439 . Cmo06g01612 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011479 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 31