Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2161 ATGCTTTATAATCACAAGGTGTCTCACCCAAGAGAATTATTTGATAATTTGTTTTTTCCTTTCTTTTTCTTCCTTGAGAAATTAGGAAAAATGTATTCTCAAGTTTCAAATTTCCCTGCTTCAACTTTGAAGGTCAATGACATTATTCCTGATACTAAGCGTTCCATTGCAAATTTTCATCCTAGTATTTGGAAGGATCATTTTCTTTCACTCACATTTGATGATGAATTGAAAGTAGATAATGCAACGAAAGGAGTTGAAAAGTTGAAGGAAGAAATAAGGATGATGGTGATTGATTCTATGGGAAACCCATTGGAGAAGCTAAAGTTGGTTGATTCAATCCAACGGCTAGGAGTATCTTATCATTTTGAAGATGAGATTCAACGATTCCTAGAACATTTATATGTTTCTTATAATTCCATTTTATTGACTAATAATGATAATAATGATGATGAAGATCTTCATATCACTGCTCTTCTTTTTCGACTACTAAGGCAACAAGGTTATACAATTTCATGCGATATATTCTTGAAGTTCGTGGACAAGAATGGAAAATTTAGAGAATCACTGGGTGAGGATGAAAGAGGAATATTGAGTCTATATGAAGCATCTCATATGAGGGGACATGGAGAAGTTTTGCTCGAGGAAGCTCTTGAATTTACAATCACACATCTTAAAACATATATTCATCAGTACTCTGATATTAATCCTAATAATTTTGGAGCTGAAGTTAGAAATGCATTGAAATTGCCCATTAGAAAAGGTGTTTCAAGAATCAAGGCAAGAGAGTATTTGGAAGTTTACCAACAACATCCTTTTCACAATAAGACTTTGCTTACATTCTCAAAAATAGACTTCAACATATTACAGAAACTTCACCAAAAGGAGTTAACTGAAATCTGCAGGTGGTGGAAGGATTTAAATGTCCCAACCAACTTTCCATTTGCGAGAGATAGAATTGTGGAGTGTTACTTTTGGATATTAAGTATATATTTTGAACCTCATTTCAAGTTTGGAAGGAAAATATTGACTAAAGTGATTGCCATGATCTCAATTATGGATGATATATATGATGCTTATGGAACATTTGAAGAACTCCAAGTTTTCACCTTAGCAATCAAAAGATGGGACATGAGCATGGTCAATCTACTTCCGGAGTATATGAAAGTTTATTATACAAATCTACTTGATCTTTTTGAAGAGATTGGTAAAGAGATAGTCAACGATGGAACATCCTATCGCCTTCACTTTGCAAAAGAAGCTATGAAAAGGCAAGCTGAATCCTATTTCAAAGAAGCTGAATGGCTAAACAAAAATTATAAACCAAAATATGAAGAATACATGGAACTGGGTTTAGCTAGTTCAGGTCATGAACTACTTTCAACTATGTTATTTGTTTGCATGGGTGACCTTGCAACAAAGGAAGTATTTGATTGGCTTTCTGATTGTCCCAAAATTCTTAAAGCCTCAAACACCATTTGTAGACTCATGGATGATGTTGTCTCCTACAAGTTTGAGAAAGAAAGAGAACATGTTGTTTCTGCGGTTGAATGTTACATGAACAATTATGGATGCTCAGAAGAGGAAACATGTGCTAAGTTATTTGAGCAAGTAGAAGTTGCATGGAAGACTATAAATGAATGTTGCCTTCATCCAATGACTGTTCCAATGCCATTTTTAATTTGTGTATTAAATCTCACAAGAGTTATAGCTCTACTTTATTCTGATGGAGATGGATATACAAATTCTAAGGGTAGGACTAAATTTCTTGTTCAGTCTCTACTTATTGATCAATTGCATTTGTAA 1806 33.78 MLYNHKVSHPRELFDNLFFPFFFFLEKLGKMYSQVSNFPASTLKVNDIIPDTKRSIANFHPSIWKDHFLSLTFDDELKVDNATKGVEKLKEEIRMMVIDSMGNPLEKLKLVDSIQRLGVSYHFEDEIQRFLEHLYVSYNSILLTNNDNNDDEDLHITALLFRLLRQQGYTISCDIFLKFVDKNGKFRESLGEDERGILSLYEASHMRGHGEVLLEEALEFTITHLKTYIHQYSDINPNNFGAEVRNALKLPIRKGVSRIKAREYLEVYQQHPFHNKTLLTFSKIDFNILQKLHQKELTEICRWWKDLNVPTNFPFARDRIVECYFWILSIYFEPHFKFGRKILTKVIAMISIMDDIYDAYGTFEELQVFTLAIKRWDMSMVNLLPEYMKVYYTNLLDLFEEIGKEIVNDGTSYRLHFAKEAMKRQAESYFKEAEWLNKNYKPKYEEYMELGLASSGHELLSTMLFVCMGDLATKEVFDWLSDCPKILKASNTICRLMDDVVSYKFEKEREHVVSAVECYMNNYGCSEEETCAKLFEQVEVAWKTINECCLHPMTVPMPFLICVLNLTRVIALLYSDGDGYTNSKGRTKFLVQSLLIDQLHL 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24960343 24963345 - PI0014016.1 Cmetu06g2161 359823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2161 601 CDD Terpene_cyclase_plant_C1 54 598 IPR044814 GO:0010333|GO:0016102
Cmetu06g2161 601 Gene3D - 102 274 IPR036965 GO:0010333|GO:0016829
Cmetu06g2161 601 Pfam Terpene synthase family, metal binding domain 279 544 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cmetu06g2161 601 SUPERFAMILY Terpenoid synthases 274 597 IPR008949 -
Cmetu06g2161 601 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 60 271 IPR008930 -
Cmetu06g2161 601 Gene3D Farnesyl Diphosphate Synthase 61 588 IPR008949 -
Cmetu06g2161 601 FunFam Isoprene synthase, chloroplastic 256 589 - -
Cmetu06g2161 601 PANTHER OS04G0344100 PROTEIN-RELATED 54 582 - -
Cmetu06g2161 601 SFLD Isoprenoid Synthase Type I 274 599 - -
Cmetu06g2161 601 Pfam Terpene synthase, N-terminal domain 63 248 IPR001906 GO:0010333|GO:0016829
Cmetu06g2161 601 SFLD Terpene Cyclase Like 1 C Terminal Domain 274 599 IPR034741 -
Cmetu06g2161 601 FunFam Isoprene synthase, chloroplastic 102 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2161 K15803 - - csv:101211697 934.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2161 Cmetu-Chr6:24960343 Cmetu06g2786 Cmetu-Chr6:24867969 6.10E-148 dispersed
Cmetu06g2161 Cmetu-Chr6:24960343 Cmetu06g1784 Cmetu-Chr6:25037114 4.20E-282 proximal
Cmetu06g2623 Cmetu-Chr6:24935766 Cmetu06g2161 Cmetu-Chr6:24960343 1.40E-100 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337