Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2174 ATGCAACACTCCCGCCGCGTGGCAGTGATCGGCGCCGGTGCCGGAGGCCTCGTCTCGGCAAGGGAACTTTCCCGCGAGGGTCACCATGTGGTCGTATTCGAACGGAATACTCAAATCGGAGGGACCTGGGTATATTCGCCGGAAATTGAATCCGACCCGCTTGGAATCGACCCGAATCGGACCCGAATTCACAGCAGCCTCTACAAATCTCTACGCACCAATCTTCCCAGAGAACTCATGGGAGTCCGTGATTACCCGTTTGTTCCTCGAGAAGGAGAGGATCGAGATCCGAGACGATTTCCAAGTCATCGAGAGGTTTTAAAGTATTTGGAAGATTTCGCTAATGAATTTGGGATTTGTAAATTGGTGAGATTTAGAACTGAGGTGGTGTTTGCTGGTTTGGAGAAGCTTGGGAAATGGAGGGTTGAATTCAGATGTGAAAATGGTGATGTTGATTATGACATTTTTGATGCTGTGATTGTTTGTGTTGGGAACTATTCGCAGCCTCATGTAGCAGAGATTCCTGGGATTGATGGATGGCCTGGGGAGCAAGTGCATAGTCACAATTATCGTGATTCCGAACCATTTCGAGGTAAGGTTGTGGTCTTGATAGGTTATTCCTTTAGTGGTATGGACATTTCGCAGGAGCTCAATGGGGTTGCCAAAGAAATTCATATTGCTTGCAGATCAGCTAAAACAGAGCTTTTGGACACAGAATCAATTATTAGTGATGCGTCATTTCATCCCATGATTGAAAGTGTACGTGAAGATGGGACTGTGGTCTTTCAAGACGGATGCGTCGTTTCGGCTGATGTTATTCTGCATTGCACTGGGTACAAATATCATTTCCCTTTTCTTGAAACCAATGGCATTGTCACGGTGGACGACAACCGTGTAGGACCTCTATACCAGCATGTCTTCCCCCCAGCATTGGCCCCAGGGCTTTCCTTTATTGGGTTACCATTTAAGGCTGTTCCTTTGCCCATCTTTGAGCTTCAAAGCAATTGGATTGCTGGTGTTTTATCAAACAGGATTGCACTTCCACCACAAGAGGAAATGTTGGCAGATGTTAAAGCTTTTTATGAAGATCTTGAAGCTTTTGGGAAGCCCAAGCATCGGACCCATGAATTGGGTGATGATATGCCTGTCTATTGTAACTGGCTTGCAACAACTTGTGGTTGTCCAGCCTTTGAAGAATGGAGGAAGCAAATGTACATTGCTATTGGTATTTATAAAATGGCCAATCCCAAGACATATCGTGATGATTGGCACGACGATGAGTTGATTCGTCAAGCTTATGAGGAATTCAGCAAGTATAATACGAATGAAAGAACACAAAACCACTCAATTTTGAATGCTTCATAA 1365 45.05 MQHSRRVAVIGAGAGGLVSARELSREGHHVVVFERNTQIGGTWVYSPEIESDPLGIDPNRTRIHSSLYKSLRTNLPRELMGVRDYPFVPREGEDRDPRRFPSHREVLKYLEDFANEFGICKLVRFRTEVVFAGLEKLGKWRVEFRCENGDVDYDIFDAVIVCVGNYSQPHVAEIPGIDGWPGEQVHSHNYRDSEPFRGKVVVLIGYSFSGMDISQELNGVAKEIHIACRSAKTELLDTESIISDASFHPMIESVREDGTVVFQDGCVVSADVILHCTGYKYHFPFLETNGIVTVDDNRVGPLYQHVFPPALAPGLSFIGLPFKAVPLPIFELQSNWIAGVLSNRIALPPQEEMLADVKAFYEDLEAFGKPKHRTHELGDDMPVYCNWLATTCGCPAFEEWRKQMYIAIGIYKMANPKTYRDDWHDDELIRQAYEEFSKYNTNERTQNHSILNAS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28312858 28317212 - PI0025660.1 Cmetu06g2174 359836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2174 454 Gene3D - 173 276 IPR036188 -
Cmetu06g2174 454 SUPERFAMILY FAD/NAD(P)-binding domain 252 427 IPR036188 -
Cmetu06g2174 454 PANTHER DIMETHYLANILINE MONOOXYGENASE 5 232 - -
Cmetu06g2174 454 PIRSF FMO 3 237 IPR000960 GO:0050660|GO:0050661
Cmetu06g2174 454 PIRSF FMO 234 397 IPR000960 GO:0050660|GO:0050661
Cmetu06g2174 454 Gene3D - 6 422 IPR036188 -
Cmetu06g2174 454 Pfam Flavin-binding monooxygenase-like 5 230 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmetu06g2174 454 Pfam Flavin-binding monooxygenase-like 245 370 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmetu06g2174 454 SUPERFAMILY FAD/NAD(P)-binding domain 3 230 IPR036188 -
Cmetu06g2174 454 PRINTS Flavin-containing monooxygenase (FMO) signature 328 341 IPR000960 GO:0050660|GO:0050661
Cmetu06g2174 454 PRINTS Flavin-containing monooxygenase (FMO) signature 29 53 IPR000960 GO:0050660|GO:0050661
Cmetu06g2174 454 PRINTS Flavin-containing monooxygenase (FMO) signature 5 21 IPR000960 GO:0050660|GO:0050661
Cmetu06g2174 454 PRINTS Flavin-containing monooxygenase (FMO) signature 263 290 IPR000960 GO:0050660|GO:0050661
Cmetu06g2174 454 PRINTS Flavin-containing monooxygenase (FMO) signature 212 227 IPR000960 GO:0050660|GO:0050661
Cmetu06g2174 454 PRINTS Flavin-containing monooxygenase (FMO) signature 185 199 IPR000960 GO:0050660|GO:0050661
Cmetu06g2174 454 FunFam Flavin-containing monooxygenase 173 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2174 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1393 Cmetu-Chr6:28303367 Cmetu06g2174 Cmetu-Chr6:28312858 3.30E-239 dispersed
Cmetu06g2174 Cmetu-Chr6:28312858 Cmetu12g0501 Cmetu-Chr12:604330 7.90E-108 dispersed
Cmetu06g0603 Cmetu-Chr6:28308379 Cmetu06g2174 Cmetu-Chr6:28312858 3.10E-237 tandem
Cmetu06g2174 Cmetu-Chr6:28312858 Cmetu06g0297 Cmetu-Chr6:28318076 5.20E-216 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g609 Blo04g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00096 . Chy12g01520 Cme12g01966 . . . Bda14g00865 . . Bma03g00842 . Sed08g2095 . . . . . . . . Bhi08g01127 Tan05g2408 Cmetu06g2174 . Hepe07g1737 . . Cla04g01176 Cam04g1233 Cec01g1744 Cco01g1790 Clacu04g1261 Cmu04g1240 Cre01g1534 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58