Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2197 ATGAGGGGTATTTCCTTTCATTTTCAGGGGAAGGGGGAGTTGGAATTTTCAGCTGCTTTTTCTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACAACAAGAACAAGAACTAGACGAAGAACAAGAAGAAGGGTTTTCTTATTTTGTTTTACCTAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGCGGTGCTGGTTGTGTTCCTTCGCTTCCTCCTGAGACTCCTGCTGTTGAACCGGTCGCTGGAGCTGGTGTTGGTAACGCCATTTTTCCGGGTGGATTGGAGCGATGTGGGGTTGGATTAGAAGATTTGGAGAGTATGTGGTCGGAAACAGCCGGCCCAGAACCGTCGTTTCTCCGATGGTTCGCCGGAGATGTTGAAGATCCCAGTTTAGGGAGTAAAAGTGGTTTGGCTAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATCGTCGATCAGGGTTCCGAATTTGACACCGGTTCTGGTAATGTTCTTACCAACATTAATCCTAATTTATCGTTTCCTCTTGCTGCTTGTGCTGGGTTTTCTGATGTTAATGGTAACAATAAGTCTTTTAATAGAAACACTTGTGGAGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGTTCAAACAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTACTGGGTCTCTTGAAAATCTTGTTGTTCCCGTTTCTGGTATGATTTATCCTCAACAACTTCAGCCATTTGAGAGCCCTGATGAGAAACCTCAGAATTTAAATACTCAGGTTTTGTTGAACCAACATCAGCAGCCTCAGAACCCTAGCTTTTATGTGCCATTGATGTTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCATAATTCGAGTGGAGGACTTGACCCCAACCCGAATGGGCAGATCCCAAAAGTCTCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAGGTGTTGCAACAGCAGCAGCAGCAGCTTGGTTATCCTCCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCGAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGTCGTATCACAATCCCCCACAGCAACAGCATCAGCATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAATAACCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTTTGATGTGATCTTCAAGATGGGTGCTTACAAAGTGTTTTCGGAAATTTCCCCACTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCATTGCTTGAGGCGCTCGATGATGTTGATCGAATTCACATTGTAGATTTTGATATTGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTGCACCATCGCTCAAAATCACTGCTTTTGCCTCTCCCTCAACTCACCATCCAATTGAACTTGGGCTTATGCGCGAAAATCTCACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTTGAAGTGATTAACTTTGATTCTTTGAACCAGAACTCCTTTCCTTTGTCATTTCCACGGTCAAGCGAAAACGAGGCCATTGCAGTAAACTTCCCTCTATGGTGTTCATCGAATCAGCCAGCGATGCTTCCATCTCTCCTCCGCTTCATCAAGCAACTCTCACCGAAAATTGTGGTTTCACTGGACCGAGGGTGTGATCGAAGTGACCTCCCCTTTCCTCAGCATATGCTTCAGGCACTTCAGTCCTACATTAACCTCCTGGAATCTCTAGATGCTATCAATATGAATTCGGATGCTGTGAACAAGATCGAAAGGTTTCTTTTGCAACCCAGAATTGAAAGTACCGTTCTGGGACGACTTCGAGCACCTGAAAGAATGCCCCTTTGGAAGACACTCTTTGCCTCTGCTGGGTTTACGCCTGTAACCTTTAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTTGAGAAACGCCAAGCTTCCCTAGTTTTATGCTGGCAGCGTCGGGAGCTCATATCTGCTTCAGCTTGGAGATGTTGA 2316 46.2 MRGISFHFQGKGELEFSAAFSSSSPICSGFAEKWVKKGEEQQEQELDEEQEEGFSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGAGCVPSLPPETPAVEPVAGAGVGNAIFPGGLERCGVGLEDLESMWSETAGPEPSFLRWFAGDVEDPSLGSKSGLANGNIPFDLDGNAGIGIVDQGSEFDTGSGNVLTNINPNLSFPLAACAGFSDVNGNNKSFNRNTCGGVVNYKSSSLGSNNRHGNFNVQNPIFTGSLENLVVPVSGMIYPQQLQPFESPDEKPQNLNTQVLLNQHQQPQNPSFYVPLMFGQQEQQLQPQLKRHNSSGGLDPNPNGQIPKVSFMDPGNEIFLRNHQLQVLQQQQQQLGYPPGLQFLPQQKAMSPKPKVVGLGDEMSYHNPPQQQHQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVINFDSLNQNSFPLSFPRSSENEAIAVNFPLWCSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28599796 28602989 + PI0010794.1 Cmetu06g2197 359859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2197 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 367 766 IPR005202 -
Cmetu06g2197 771 Pfam GRAS domain family 409 770 IPR005202 -
Cmetu06g2197 771 ProSiteProfiles GRAS family profile. 399 770 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2197 K27747 - - csv:101218630 1400.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2197 Cmetu-Chr6:28599796 Cmetu11g2263 Cmetu-Chr11:2647552 5.10E-115 dispersed
Cmetu06g2197 Cmetu-Chr6:28599796 Cmetu07g1644 Cmetu-Chr7:4244046 4.70E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g526 . . . . . . . . Cmo06g00799 Cmo16g01195 . . . . Sed07g1687 Cpe14g00948 . Bhi11g00199 Tan01g2024 Cmetu06g2197 . Hepe06g1136 Mch10g1820 . Cla10g00261 Cam10g0267 Cec10g0274 Cco10g0272 Clacu10g0268 Cmu10g1111 Cre10g0519 . . . . Lsi07g01305 . . Cme06g02576 . . Bda07g00131 . . Bpe11g00361 . . . . . Cma06g00779 Cma16g01144 Car06g00693 Car16g01082 Cpe08g00744 . . . . . . . . . . . . . . . . Csa03g00280 Chy06g02042 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g0553 . 80 758 GRAS Transcription Factor Family AT2G37650 54.3 4.4e-198 688.3
Cmetu12g1542 . 313 695 GRAS Transcription Factor Family AT3G46600 56.4 7.9e-126 448.0
Cmetu08g0772 . 48 467 GRAS Transcription Factor Family AT3G49950 60.3 8.2e-136 480.7
Cmetu06g2197 . 402 771 GRAS Transcription Factor Family AT3G60630 51.5 5.3e-94 342.4
Cmetu07g1514 . 66 444 GRAS Transcription Factor Family AT5G41920 71.1 1.2e-150 530.0
Cmetu08g1297 . 458 834 GRAS Transcription Factor Family AT5G41920 56.6 3.5e-115 412.1
Cmetu08g0213 . 1 609 GRAS Transcription Factor Family AT5G66770 59.7 1.5e-183 639.8
Cmetu07g1100 . 1 591 GRAS Transcription Factor Family AT5G66770 55.1 5.0e-171 598.2
Cmetu11g2092 . 57 545 GRAS Transcription Factor Family AT1G50600 59.2 1.5e-163 573.2
Cmetu06g1047 . 46 544 GRAS Transcription Factor Family AT1G50600 58.4 1.9e-161 566.2
Cmetu04g1140 . 103 541 GRAS Transcription Factor Family AT1G50600 56.1 3.7e-141 498.8
Cmetu04g0683 . 202 593 GRAS Transcription Factor Family AT1G50600 57.9 4.9e-133 471.9
Cmetu09g1879 . 44 567 GRAS Transcription Factor Family AT1G14920 66.1 1.7e-197 686.0
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT1G14920 56.1 4.6e-155 545.0
Cmetu06g2650 . 26 387 GRAS Transcription Factor Family AT1G55580 50.9 7.6e-103 371.3
Cmetu09g1879 . 1 565 GRAS Transcription Factor Family AT1G66350 54.8 3.3e-163 572.0
Cmetu06g1601 . 1 553 GRAS Transcription Factor Family AT1G66350 55.6 7.7e-160 560.8
Cmetu11g2092 . 19 545 GRAS Transcription Factor Family AT5G48150 65.9 1.3e-193 672.9
Cmetu06g1047 . 17 544 GRAS Transcription Factor Family AT5G48150 57.5 6.0e-170 594.3
Cmetu04g1140 . 96 541 GRAS Transcription Factor Family AT5G48150 57.8 2.9e-148 522.3
Cmetu04g0683 . 128 593 GRAS Transcription Factor Family AT5G48150 53.3 3.3e-136 482.3
Cmetu01g2186 . 179 570 GRAS Transcription Factor Family AT5G48150 53.0 2.2e-119 426.4
Cmetu09g1879 . 46 564 GRAS Transcription Factor Family AT2G01570 67.0 3.6e-201 698.4
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT2G01570 58.1 5.7e-159 558.1
Cmetu09g1879 . 1 565 GRAS Transcription Factor Family AT1G66350 54.8 3.3e-163 572.0
Cmetu06g1601 . 1 553 GRAS Transcription Factor Family AT1G66350 55.6 7.7e-160 560.8
Cmetu09g1879 . 46 564 GRAS Transcription Factor Family AT3G03450 58.2 4.4e-161 565.1
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT3G03450 57.3 8.9e-154 540.8
Cmetu09g1879 . 42 564 GRAS Transcription Factor Family AT5G17490 55.0 7.7e-147 517.7
Cmetu06g1601 . 1 554 GRAS Transcription Factor Family AT5G17490 50.4 7.4e-134 474.6
Cmetu01g2186 . 1 570 GRAS Transcription Factor Family AT1G21450 57.5 7.1e-173 604.4
Cmetu06g1047 . 168 544 GRAS Transcription Factor Family AT1G21450 52.4 1.3e-113 407.5
Cmetu04g0683 . 225 593 GRAS Transcription Factor Family AT1G21450 50.8 1.8e-107 387.1
Cmetu12g1542 . 321 695 GRAS Transcription Factor Family AT5G59450 56.2 1.0e-126 451.1
Cmetu08g0553 . 309 758 GRAS Transcription Factor Family AT5G59450 50.3 8.1e-124 441.4
Cmetu04g1140 . 1 541 GRAS Transcription Factor Family AT4G17230 58.1 2.2e-173 605.9
Cmetu11g2092 . 1 545 GRAS Transcription Factor Family AT4G17230 50.6 1.9e-145 513.1
Cmetu06g1047 . 49 544 GRAS Transcription Factor Family AT4G17230 52.1 1.2e-134 477.2
Cmetu04g0683 . 220 593 GRAS Transcription Factor Family AT4G17230 51.9 4.4e-110 395.6
Cmetu11g2092 . 134 545 GRAS Transcription Factor Family AT2G04890 66.1 2.1e-160 562.4
Cmetu06g1047 . 148 544 GRAS Transcription Factor Family AT2G04890 58.9 7.2e-140 494.2
Cmetu04g0683 . 206 593 GRAS Transcription Factor Family AT2G04890 56.0 4.1e-127 451.8
Cmetu04g1140 . 161 541 GRAS Transcription Factor Family AT2G04890 58.0 3.8e-125 445.3
Cmetu10g0531 . 1 462 GRAS Transcription Factor Family AT1G50420 61.3 9.8e-157 550.4
Cmetu02g0988 . 1 435 GRAS Transcription Factor Family AT1G50420 58.0 6.4e-148 521.2
Cmetu06g2197 . 408 771 GRAS Transcription Factor Family AT4G00150 56.0 1.2e-105 380.9
Cmetu07g1100 . 1 591 GRAS Transcription Factor Family AT3G50650 51.3 2.6e-153 539.3
Cmetu08g0213 . 1 609 GRAS Transcription Factor Family AT3G50650 51.1 6.3e-152 534.6
Cmetu08g1297 . 235 832 GRAS Transcription Factor Family AT3G54220 63.9 2.5e-203 705.7
Cmetu07g1514 . 74 442 GRAS Transcription Factor Family AT3G54220 64.2 7.6e-136 481.5
Cmetu08g1528 . 90 490 GRAS Transcription Factor Family AT4G37650 67.3 1.2e-158 557.0
Cmetu11g0520 . 97 491 GRAS Transcription Factor Family AT4G37650 55.2 1.6e-123 440.3
Cmetu11g1296 . 64 455 GRAS Transcription Factor Family AT4G37650 50.6 1.4e-111 400.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012128 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8135 PF03514 GRAS 6.20E-95 CL0063 Cmetu TF