Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2212 ATGTCATCTTCTTCCCTTCCTACTACTTTCTCCCAACTTCCTCCTCCTCTTCCTCCTCCTTCTGACCAGCTTTGCTATGTTCATTGTAACATTTGCGACACGGTTTTAGCGGTGAGTGTTCCTTCTACTAGTTTGTTCAAAAGGGTTACTGTTCGTTGTGGCTATTGTGCCAATCTTCTGCCAGTGAACATGTGTGGTGGAATGCTTCTCCCTTCTCCAATTCCATTTCATGGCTTCACTCACTCAACCACTTTTTTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATCCAAATCCAAATTTTTTGATGAACCAAACAGAAGGAATTGATTTAACTATGGCCACTCGTGTACCTAATGATGTTCCAAGGCAGCCTCCAACCATAAATAGACCTCCAGAAAAGAGACAAAGGGTACCCTCTGCTTACAACCGATTCATCAAGGACGAGATTCAACGCATTAAGGCTGCCAATCCAGACATCTCTCATCGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCTCATTTCCCTCACATTCAATTTGGTTCTTCCTCCTGA 567 43.56 MSSSSLPTTFSQLPPPLPPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVNMCGGMLLPSPIPFHGFTHSTTFFSPNTHNFLEEISNPNPNFLMNQTEGIDLTMATRVPNDVPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIQFGSSS 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28279198 28284498 + PI0014031.2 Cmetu06g2212 359874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2212 188 PANTHER PROTEIN YABBY 6-RELATED 1 186 IPR006780 GO:0007275
Cmetu06g2212 188 Pfam YABBY protein 20 185 IPR006780 GO:0007275
Cmetu06g2212 188 Gene3D High mobility group box domain 127 182 IPR036910 -
Cmetu06g2212 188 FunFam axial regulator YABBY 5-like 124 182 - -
Cmetu06g2212 188 MobiDBLite consensus disorder prediction 120 141 - -
Cmetu06g2212 188 SUPERFAMILY HMG-box 124 180 IPR036910 -
Cmetu06g2212 188 CDD HMG-box_SF 140 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2212 K25796 - - csv:101219601 348.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1785 Cmetu-Chr3:123365 Cmetu06g2212 Cmetu-Chr6:28279198 1.10E-19 dispersed
Cmetu06g2212 Cmetu-Chr6:28279198 Cmetu10g0308 Cmetu-Chr10:18582509 1.50E-31 dispersed
Cmetu06g2212 Cmetu-Chr6:28279198 Cmetu09g0297 Cmetu-Chr9:2927555 7.40E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1095 . 3 172 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 1.5e-44 176.4
Cmetu09g0297 . 88 248 C2C2-YABBY Transcription Factor Family AT2G45190 59.2 6.2e-42 167.5
Cmetu05g1548 . 1 142 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 3.3e-44 175.3
Cmetu02g0863 . 6 170 C2C2-YABBY Transcription Factor Family AT1G08465 55.9 1.3e-43 173.3
Cmetu09g0297 . 44 238 C2C2-YABBY Transcription Factor Family AT1G08465 52.3 1.6e-43 172.9
Cmetu06g2212 . 21 185 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.6e-38 156.4
Cmetu09g0297 . 55 247 C2C2-YABBY Transcription Factor Family AT4G00180 55.7 1.0e-49 193.7
Cmetu10g0308 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 55.7 4.4e-42 168.7
Cmetu02g0863 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 68.0 2.5e-59 225.3
Cmetu05g1829 . 8 159 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.2e-59 224.6
Cmetu09g0297 . 46 209 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 1.7e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8136 PF04690 YABBY 1.40E-66 CL0114 Cmetu TF