Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2228 ATGGTTACCCATTTGGTTGATTCTCAAGAAGTTGATCGACTTTTGGTTCCTCCGTTGGGAATTGAAGGTGGGTCTTGGCACTCGACTACTACTGAAGATGCCCTAACTCAACAATCTCTAGTTCCTTCTTCCTCTTGCCGTAATGGGAATTTTTCTTTTTCGCCTATGGATGCCTCTGGTAATCAGTCTTGGGGTTCTTCTTCGATAAACCCTACTGGGTCTTCGTCATTTTCAACTTATTCGTCTGATTCTGATGGACTCGACCCATTGGCTCCTGTGCCGGGATCGTCTTTGGAGTGGGCTTCTTCAGAGGAAGCTTTCCCAGAAAATTCAGTGTCTGTTCAAGAAACCGAATCTCTATCAGCGGGTGCGGGACTTGCAAATTTGGGGAATACTTGTTTTATTAACGCAATCTTGCAGTGCCTCACTCATACTGCTCCATTTGTGGAGGGTCTTCGATCTGCTAATCATGATATGCCTTGTAACAGTGAAGATTTTTGTGTTCTTTGTGCAATTCGAGATCATATCGAGCTCTCCTTAACTTCTCTGGGTGGGATTATCTCACCAATGAAACTTGTTGATAACTTGAACTACTTTTCATCTTTTTTCCGGAGATACCAGCAGGAAGATGCCCATGAGTTCATGCAGTGCTTCTTGGATAAACTTGAAAGATGCATGGTTTCAGAAGCAAAGGATCGGGTTTCTTCAGAGGATGACGATCTAGTGAACAAGGTGTTTGGTGGTCGTCTCATAAGCAATCTTTGCTGCTGTAATTGTGGCCATTGTTCCGAAACCCATGAGCCTTTGGTTGACTTGAGTTTGGAGATTGAGAATGTAGACTCTCTTTCTAGTGCTCTGGAATCTTTCACCAAGGTGGAGAGAATTGGTGATCCAGAGACAAAATTTAAGTGTGAAAACTGCAAAGAGGAGGTGTGGGTGGAGAAGCAGCTTAGGCTGGAAAAAATCCCTTTGGTTACTACATTCCACTTAAAGAGATTCAAGGCTGATAGTTCTTTTGTTGAGAAAATCGAAAAGCACTTGGAGTTTCCATTAGAGTTAGATTTGCAGCCGTACACCCTGGGAGGCCAGGATGCAGAGGTGGAACTCAAGTATGAATTGTATGCCATTGTGGAACACACAGGGTTTTCCTCTACTTCTGGGCACTACTTCAGCTTTGTTCGTTCCTCTCCTGATACGTGGCACAGAATGGATGACTCATTGGTTACTCCAGTCACCAAAGAGTATGTGCTGTCACGTGAGGCCTACATTCTCTTATATAAGAGGAAGGGAACTTCATGGTTCTCAAGTTTAATTCAACGATCAGATCCTTGCTTGAATCCATTACCCAAGTTGGTTTTGCAAAATATCGATACTGTTCGCTCTTCATTTGCTGCTGAGTCTAATGTCAATCACGAACCTGCAAATGCACCTACAGATACTTTGCAACCAAGTCCTGCTCGGTTTTCCTGTGAAATGGGGAATCAAGATACTGGTGTCAATGATTTGGAAAATGCTACTTCTGCTAACTTGAATATAGTTGAGAGTGCAACAACGAAGTCTTCTCCCATTGTAACTAAGAATCTCTGTTTGAATGATGAAGATGAAAGTATTGATGGTTTTCATCCTCTATCGCCAATGAGATCTCCCAGCCCCGATAATATCTTCCGGACTCCAGAACCACAATACCGAATCCCAGTCGATCATCTGAAGACAGAAAAGTGCTCGACATCTGGAAGCCCATTGAATAAGGGTGTGGAAGATTCTGAAAGAAAAGCAGCCATGAGGTACGTTAAGAAGAACATGCCAGGTTCGAGAGGGTCGAAAATGATAGCTGCTATATTGGGATCTCAGAGCGAAGGCTCCTCTTTGAACAAGAAGAAGAGACTAAGGTCATTACCATGTAAAAGGTCAAGCCCGCCTAACACTCGTCGCAAAACAAGTATAGTTCTGTGA 1953 43.37 MVTHLVDSQEVDRLLVPPLGIEGGSWHSTTTEDALTQQSLVPSSSCRNGNFSFSPMDASGNQSWGSSSINPTGSSSFSTYSSDSDGLDPLAPVPGSSLEWASSEEAFPENSVSVQETESLSAGAGLANLGNTCFINAILQCLTHTAPFVEGLRSANHDMPCNSEDFCVLCAIRDHIELSLTSLGGIISPMKLVDNLNYFSSFFRRYQQEDAHEFMQCFLDKLERCMVSEAKDRVSSEDDDLVNKVFGGRLISNLCCCNCGHCSETHEPLVDLSLEIENVDSLSSALESFTKVERIGDPETKFKCENCKEEVWVEKQLRLEKIPLVTTFHLKRFKADSSFVEKIEKHLEFPLELDLQPYTLGGQDAEVELKYELYAIVEHTGFSSTSGHYFSFVRSSPDTWHRMDDSLVTPVTKEYVLSREAYILLYKRKGTSWFSSLIQRSDPCLNPLPKLVLQNIDTVRSSFAAESNVNHEPANAPTDTLQPSPARFSCEMGNQDTGVNDLENATSANLNIVESATTKSSPIVTKNLCLNDEDESIDGFHPLSPMRSPSPDNIFRTPEPQYRIPVDHLKTEKCSTSGSPLNKGVEDSERKAAMRYVKKNMPGSRGSKMIAAILGSQSEGSSLNKKKRLRSLPCKRSSPPNTRRKTSIVL 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29693223 29697130 + PI0017151.1 Cmetu06g2228 359890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2228 650 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 124 429 IPR028889 -
Cmetu06g2228 650 MobiDBLite consensus disorder prediction 540 559 - -
Cmetu06g2228 650 SUPERFAMILY Cysteine proteinases 124 428 IPR038765 -
Cmetu06g2228 650 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 371 389 IPR018200 GO:0004843|GO:0006511
Cmetu06g2228 650 MobiDBLite consensus disorder prediction 617 650 - -
Cmetu06g2228 650 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 63 429 - -
Cmetu06g2228 650 FunFam Ubiquitin carboxyl-terminal hydrolase 20 120 432 - -
Cmetu06g2228 650 Gene3D Cysteine proteinases 121 431 - -
Cmetu06g2228 650 MobiDBLite consensus disorder prediction 635 650 - -
Cmetu06g2228 650 Pfam Ubiquitin carboxyl-terminal hydrolase 125 426 IPR001394 GO:0004843|GO:0016579
Cmetu06g2228 650 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 125 140 IPR018200 GO:0004843|GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2228 K11855 - - csv:101210383 1212.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1573 Cmetu-Chr5:4320639 Cmetu06g2228 Cmetu-Chr6:29693223 4.10E-66 dispersed
Cmetu06g2228 Cmetu-Chr6:29693223 Cmetu07g1151 Cmetu-Chr7:23868232 2.40E-41 dispersed
Cmetu06g2228 Cmetu-Chr6:29693223 Cmetu04g0414 Cmetu-Chr4:31449726 9.80E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46