Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2275 ATGGGTCTGTGTGGGAAGTTGGAAAAGAAAGTACCAATCAGAGCTTCAGCTTCAAAGTTTCATGAAATATTTCATAGGAGACCTCACCATATCTCAAATTTCTCTGCCGACAAAGTACACGGTGTCGACCTACACGAGGGCGAATGGGGCAAAGTTGGCTCGATCGTCTGCTGGAGATACATGCTTGACGGGAAGTCTAGAGCGACAAAGGAGATCGTCGAAGAAGTCAACAAAGAGAACAATTCGATAACTTTCAAAGTAATCGAGGGAGACCTTATGGAACAATACAAGAATTTCAGGTTTAAAATTCAGTGTATTCCAAAGGAAAAGGGAAGTGTGGTTCATTGGTGCTTAGAATATGAAAAACTACATGATGAGATTCCAGATTCTTCACATGCTTTAATGATGGAAATTTGTGTTGGTGTCTCTAAAGACATTGATGCTTACCTTATGGAAGGTAGTGACAAACCCTAG 474 40.93 MGLCGKLEKKVPIRASASKFHEIFHRRPHHISNFSADKVHGVDLHEGEWGKVGSIVCWRYMLDGKSRATKEIVEEVNKENNSITFKVIEGDLMEQYKNFRFKIQCIPKEKGSVVHWCLEYEKLHDEIPDSSHALMMEICVGVSKDIDAYLMEGSDKP 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5921888 5922928 + PI0006842.1 Cmetu06g2275 359937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2275 157 SUPERFAMILY Bet v1-like 5 153 - -
Cmetu06g2275 157 Gene3D - 1 152 IPR023393 -
Cmetu06g2275 157 PANTHER MLP-LIKE PROTEIN 423 1 150 - -
Cmetu06g2275 157 SMART Bet_v_1_2 2 153 IPR000916 GO:0006952
Cmetu06g2275 157 Pfam Pathogenesis-related protein Bet v 1 family 5 152 IPR000916 GO:0006952
Cmetu06g2275 157 CDD Bet_v1-like 5 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2275 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2275 Cmetu-Chr6:5921888 Cmetu10g1651 Cmetu-Chr10:11208731 1.10E-43 dispersed
Cmetu06g1702 Cmetu-Chr6:5916105 Cmetu06g2275 Cmetu-Chr6:5921888 7.10E-51 tandem
Cmetu06g2275 Cmetu-Chr6:5921888 Cmetu06g0281 Cmetu-Chr6:5930530 1.50E-61 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g446 . . . . . . Bma14g01942 Bma15g00037 . . . . . . . . . Bhi07g00318 Tan04g1589 Cmetu06g2275 Lac13g1456 Hepe01g0498 . . Cla07g00693 Cam07g0724 . Cco07g0763 Clacu07g0724 Cmu07g0730 . . . . . . . Chy10g00249 . Blo06g01017 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01164 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000126 7 11 4 7 2 7 0 7 4 5 8 6 16 3 3 16 6 2 0 15 6 6 11 14 6 8 10 7 13 6 216