Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2349 ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCTCCATCTCCACGTGAACACGACAGACTCCTCCCGATTGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGTAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCATAACGAGAAACGAAAAACGATCAACGGCGATGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACACTTGCCTCACGTGACTCCGCCTCCTCCGTCCCGAACTCCGCCGTAGCTGGTAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACGATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCCGGGTTTAGTACTACGGGTCGGCCCAGAAAACTCTGTATTGAAAATGAAGATATGGAAGCTACAATAATATATTTATAG 579 51.81 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSVPNSAVAGNSGFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFSTTGRPRKLCIENEDMEATIIYL 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27139757 27141673 - PI0020291.1 Cmetu06g2349 360011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2349 192 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Cmetu06g2349 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 119 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmetu06g2349 192 Gene3D Histone, subunit A 11 132 IPR009072 GO:0046982
Cmetu06g2349 192 SUPERFAMILY Histone-fold 22 126 IPR009072 GO:0046982
Cmetu06g2349 192 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cmetu06g2349 192 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cmetu06g2349 192 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cmetu06g2349 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cmetu06g2349 192 MobiDBLite consensus disorder prediction 1 23 - -
Cmetu06g2349 192 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2349 K08065 - - csv:101204640 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2588 Cmetu-Chr1:24681432 Cmetu06g2349 Cmetu-Chr6:27139757 3.60E-39 dispersed
Cmetu02g1334 Cmetu-Chr2:836844 Cmetu06g2349 Cmetu-Chr6:27139757 1.70E-26 dispersed
Cmetu02g1454 Cmetu-Chr2:843032 Cmetu06g2349 Cmetu-Chr6:27139757 3.00E-25 dispersed
Cmetu06g2349 Cmetu-Chr6:27139757 Cmetu07g1457 Cmetu-Chr7:4048243 7.60E-44 dispersed
Cmetu06g2349 Cmetu-Chr6:27139757 Cmetu08g0078 Cmetu-Chr8:21871879 1.70E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1146 . 42 147 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.1 1.8e-47 186.4
Cmetu06g2349 . 6 152 CCAAT-HAP3 Transcription Factor Family AT5G47670 50.3 1.7e-37 153.3
Cmetu06g1146 . 44 169 CCAAT-HAP3 Transcription Factor Family AT1G21970 72.9 7.5e-49 191.0
Cmetu07g1457 . 9 136 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.0 2.3e-37 152.9
Cmetu06g2349 . 1 152 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.0 1.3e-49 193.0
Cmetu07g1457 . 27 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.2e-47 184.1
Cmetu11g2212 . 1 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 4.0e-46 181.4
Cmetu08g0078 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 4.5e-45 177.9
Cmetu10g1537 . 11 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.3 3.2e-43 171.8
Cmetu01g2588 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.0e-37 152.5
Cmetu10g1537 . 1 118 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.7 3.7e-49 191.4
Cmetu08g0078 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.1e-48 188.3
Cmetu06g2349 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 9.8e-42 166.8
Cmetu07g1457 . 14 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.8e-41 165.2
Cmetu01g2588 . 34 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.3e-38 156.4
Cmetu01g2588 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cmetu06g2349 . 19 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.2 1.2e-39 159.8
Cmetu07g1457 . 30 138 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.2e-38 154.5
Cmetu08g0078 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.7 1.9e-62 235.7
Cmetu10g1537 . 7 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.9 5.6e-54 207.6
Cmetu07g1457 . 29 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.2e-41 164.9
Cmetu06g2349 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 7.2e-41 164.1
Cmetu01g2588 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.2e-37 150.6
Cmetu07g1457 . 17 131 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.3e-44 176.0
Cmetu08g0078 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 6.6e-44 174.5
Cmetu06g2349 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.3e-41 166.0
Cmetu01g2588 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.0 2.6e-40 162.5
Cmetu10g1537 . 28 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 4.9e-39 158.3
Cmetu06g2349 . 1 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.7 4.2e-50 194.9
Cmetu07g1457 . 25 130 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 9.0e-45 177.2
Cmetu08g0078 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.8e-44 174.5
Cmetu10g1537 . 14 138 CCAAT-HAP3 Transcription Factor Family AT5G47640 65.6 7.6e-44 174.1
Cmetu11g2212 . 1 112 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.0 2.1e-41 166.0
Cmetu01g2588 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.3e-38 156.8
Cmetu08g0078 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 8.3e-61 230.3
Cmetu10g1537 . 12 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.6 9.8e-54 206.8
Cmetu06g2349 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.5e-41 166.4
Cmetu07g1457 . 18 122 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.3e-41 164.1
Cmetu01g2588 . 19 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.2 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8149 PF00808 CBFD_NFYB_HMF 2.20E-27 CL0012 Cmetu TF