Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2378 ATGGAGTTGGAGGGGGTTGATGACCTTTCCCTTCATCTGGTTTTTGCGAAATTAGGCCCTAAAGATTCTGCCATAGCTGCTTGTGTTAGCCGCCAATTCCGGTCTTCAGCGTCCGAAGATTCTTTGTGGAAGAAATTCTGCAACCAGGACCTCAACCTCACCGACCCAGTTGATCATTTGGGAAACCCAATTCCTTCATTCAAGGAGACGTATCAAGTATGGCACAGAGCTTTTGGGATGTACCCTTGGCCTCTAGTCAAGCGAGTTAAGAGATGTTGGGATAGACTCAAAAACTGGTTGAGTACTAATTTTCCTGAGGCTTTGGGGACACTTCAGGATGGTGCATCAGAAGCTGACATTGAAGAATTGGAAATTGTTTTGAAAGTGAAGCTTCCTCTTCCAACAAGGATCCTGTATCGTTTTCACAATGGTCAAGAGTTAAGAGGCGGATATGTTGATAGTATTAGAGGCTTTCCGTTGGGTTTAATCGGGGGATACTCTTTCTATGGCCAGACAGTAAATGTCTATTTGTTGCCTTTAAGAAAGGTGGTCTGCGAAACAAAATCAATCATTCGAGATGTTGGTTTTTCAAGGAAATCCAAATTTATTGTTGTAGCTTCCTCTTCTACACTCACTGAGAAGGTCTTCTTCCTTAATTGCGTCTCTGGACAACTCTTTGTGGGTACTGCAAAACTTCGTGATGATGGAGAAATGATCCCATGTGTACCTTGGGCATTGATAAACTCAGTACATGAGTATAACACAGAACAGCAACAAGATGCCATGTTATTATGGCTAGAAGAGCATGTTCGGCGCTTAGAAAATGGTATTATCAAGCTACGCGAAATTAAGAACATTAGAAGCATCTCTCTTTTTCCGGAAGAACCTCCATTATGCTCTGCTGCAATAACCAATGGTGTCAGTGTTCGTGCTTCTGCTGTCTTTCTCCCAGAATCGACTGATATCCTAGATAGCAGTGGCAACCATCAATTTGCATATTCAATCCGTATGTCATTACAGGATGAAGGTTGCATCATAAATGGGATGACATTCAACTCTTGCCAACTGCATCTTAGACATTGGATAGTTCGAGCTAATGATCATGTGGTTTCTATAGTTGATGCCGAGGCCGTTATTGGAAAGTTTCCCCTCTTGCGGCCGGGAGAAGAATTTGTCTACGAGAGTTGCTCATCTCTTTATTCCTCAATGGGCTCACTTGAAGGGTCTTTTACATTTGTCCCCGGAAGGATGAATTTTTCAACTCAACCCAAACCAAGCAATCCTTACAAGATGGACTCAACTCAGCCCGACGATGGAAAAAAGATGGTTTAA 1332 42.72 MELEGVDDLSLHLVFAKLGPKDSAIAACVSRQFRSSASEDSLWKKFCNQDLNLTDPVDHLGNPIPSFKETYQVWHRAFGMYPWPLVKRVKRCWDRLKNWLSTNFPEALGTLQDGASEADIEELEIVLKVKLPLPTRILYRFHNGQELRGGYVDSIRGFPLGLIGGYSFYGQTVNVYLLPLRKVVCETKSIIRDVGFSRKSKFIVVASSSTLTEKVFFLNCVSGQLFVGTAKLRDDGEMIPCVPWALINSVHEYNTEQQQDAMLLWLEEHVRRLENGIIKLREIKNIRSISLFPEEPPLCSAAITNGVSVRASAVFLPESTDILDSSGNHQFAYSIRMSLQDEGCIINGMTFNSCQLHLRHWIVRANDHVVSIVDAEAVIGKFPLLRPGEEFVYESCSSLYSSMGSLEGSFTFVPGRMNFSTQPKPSNPYKMDSTQPDDGKKMV 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6079836 6085694 - PI0010571.4 Cmetu06g2378 360040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2378 443 SMART fbox_2 6 46 IPR001810 GO:0005515
Cmetu06g2378 443 Gene3D - 7 99 - -
Cmetu06g2378 443 SUPERFAMILY SMI1/KNR4-like 92 159 IPR037883 -
Cmetu06g2378 443 PANTHER F-BOX PROTEIN SKIP16 1 418 - -
Cmetu06g2378 443 SUPERFAMILY F-box domain 11 76 IPR036047 GO:0005515
Cmetu06g2378 443 SUPERFAMILY ApaG-like 303 415 IPR036767 -
Cmetu06g2378 443 Pfam ApaG domain 325 413 IPR007474 -
Cmetu06g2378 443 MobiDBLite consensus disorder prediction 421 443 - -
Cmetu06g2378 443 Gene3D ApaG domain 299 429 IPR036767 -
Cmetu06g2378 443 ProSiteProfiles ApaG domain profile. 301 438 IPR007474 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2378 K10290 - - csv:101212250 788.104
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1272 . . . . . . . . . . . . . . Sed02g1061 . . Bhi01g01192 Tan10g1203 Cmetu06g2378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011929 1 2 1 1 1 0 1 0 0 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 2 1 2 30