Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2423 ATGCTTGTTTGCTTCACTTACTTCACTCAATTTCTATCATCTCCTTCAATTCCCCTTCTTTTCTTCACAAATCGGAGCCGCAGAATTCTGCACGATGCCTCCGATTTCTCTGCAACTCACCCCTTCATTTCCCCACTACTCCACCGCCCTAATCTCTGCCTTCACCGACCCCCAATTCCCGCTCTCTCGCCGCCCAGATCACTCACCGTCCGATCGGTTCAACAAAATAACGAATACCCATCTCCATCGCCACCGCCAAAACCCACTGGTTTGGACCATTTTCTTTCCACGGCCGCTAGTCTCTACCCTCTCTATGTGACGGCCGGAGGGATTGTTGCTTGCCTCGAACCCTCGACCTTCTCGTGGTTTGTGCAGAGAGGGCCGAGTTCCTATAGCTTATCTCTTGGTTTGATTATGTTGGCCATGGGGCTTACTCTAGAGATCAAGGATTTATTTAATTTGGTCATGCAAAGACCTCTTTCCATATTGTTTGGATGTGTAGCTCAGTACACAATTATGCCGGCTTCTGCAGCGCTGATCGGAAAACTGTTAGGGCTTTCGCAGTCACTTTTGTTCGGTTTGATCTTGCTTGGATGTTGCCCTGGAGGAACTGCTTCCAATGTGGTAACCTTAATTGCTCAAGGCGACGTTACTTTGTCTATTGTAATGACAGTATGCAATACTCTAGGAGCCGTAATTCTCACTCCCTTTCTCACAAAAATTCTAGCAGGAGCTTACACTTCAGTCGACGCTGCACAGCTTTCTCTCAGCACCCTTCAGGTGGTGGTAGCTCCTATTCTGTTAGGTTCTTGCTTGCAAAAGGCATTTCCTTCCTTGGTGAAATTGGTGTTACCATTTGCACCACTTGTTGCTGTATTAACTTCCTCGCTGCTTGCTAGCAGTGTCTTCTCGGAGAATGTCATTCGTTTCAAATCGTCAATGGTTAGTGCCACATTGGCCTCTGATGCATCTCTATGGACAGTCCTTAAAAGTATATTATCAGGAGAGCTGGGAGTTATAATACTTTCGGTGTTTTGTTTACACTTTGCTGGTTTTTTTGTTGGGTATATAGCAGCTGCTATCGGTGGGTTTCGAGAACGTGAACGAAGAGCGATATCCATGCAGGTAACAAAACAACATTCACTTATCGAGAAATTGAAAAACATAGACATATGGATGAGAGGGTGTGGATTTTGGTTTCAGGTTGGGATGCAGAATTCATCACTGGGAGTTATTTTGGCAGCCTCACATTTTAGTTCACCAATGGTGGCATTGCCTCCAGCAATGTCAGCTGTGATAATGAACATAATGGGGAGCACTCTTGGATTTTGTTGGAGATATATTCAACCTTCTGATGAAGTGAAAACCAGTTTTGTTGCCAAGTGA 1386 45.31 MLVCFTYFTQFLSSPSIPLLFFTNRSRRILHDASDFSATHPFISPLLHRPNLCLHRPPIPALSPPRSLTVRSVQQNNEYPSPSPPPKPTGLDHFLSTAASLYPLYVTAGGIVACLEPSTFSWFVQRGPSSYSLSLGLIMLAMGLTLEIKDLFNLVMQRPLSILFGCVAQYTIMPASAALIGKLLGLSQSLLFGLILLGCCPGGTASNVVTLIAQGDVTLSIVMTVCNTLGAVILTPFLTKILAGAYTSVDAAQLSLSTLQVVVAPILLGSCLQKAFPSLVKLVLPFAPLVAVLTSSLLASSVFSENVIRFKSSMVSATLASDASLWTVLKSILSGELGVIILSVFCLHFAGFFVGYIAAAIGGFRERERRAISMQVTKQHSLIEKLKNIDIWMRGCGFWFQVGMQNSSLGVILAASHFSSPMVALPPAMSAVIMNIMGSTLGFCWRYIQPSDEVKTSFVAK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24006519 24013437 + PI0021883.3 Cmetu06g2423 360085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2423 461 PANTHER SODIUM-BILE ACID COTRANSPORTER 79 452 IPR004710 -
Cmetu06g2423 461 Pfam Sodium Bile acid symporter family 133 308 IPR002657 GO:0016020
Cmetu06g2423 461 Gene3D - 89 383 IPR038770 -
Cmetu06g2423 461 Gene3D - 396 447 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2423 K03453 - - csv:101206254 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2423 Cmetu-Chr6:24006519 Cmetu07g0239 Cmetu-Chr7:21100588 7.20E-40 dispersed
Cmetu06g1963 Cmetu-Chr6:23954804 Cmetu06g2423 Cmetu-Chr6:24006519 8.10E-128 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00636 . . . . . . . . . . Sed07g1851 . . . . . . . . Bhi11g00780 Tan01g1553 Cmetu06g2423 . . Mch10g0653 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003304 1 3 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 2 1 2 2 1 1 2 1 50