Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2483 ATGTCTGTTTTATGTCTTTGCTTCTGCCTTTTATTTGCTGGCGCCGCCGCGTCCGGTGGAGACGGTGGCCCCCACTCCAGGGAGCTCGATAACACACCCACCTGGGCTGTGGCTGCTGTTTGCTTCTTTTTCATTCTTATTTCCATTGTCTTGGAAAATGTTCTTCACAAACTTGGAACGTGGTTGACAGAAAAGCACAAGAGTTCTCTGTATGAAGCTCTGGAGAAGGTTAAGGCTGAGTTGATGATTTTGGGTTTCATCTCCCTGCTTCTGACTTTTGCTCAAGCATATATAGTCCAAATTTGTATTCCTCCGGCCATTGCAAACTCCATGTTGCCCTGTCCCCTTAAAGAGAAAGATGCTTCATCATCTACAACCGATGAAGACGAACATCACCGGAGACTACAATGGCTAATTCGAAGATCATTGGCTGGAGGTCACAATGTCGTCTCGTGTAAGGATGGTAAGGTGTCTCTTATATCTATTGATGGATTGCATCAGTTGCACATTCTCATTTTCTTCTTAGCTGTATTTCATGTGCTCTTTAGTGTTATCACAATGACACTTGGAAGGGTAAAGATTCGAGGCTGGAAGGAGTGGGAGCAGGAAACTTTAACGCATAACTATGAGTTTTTCAATGATCCTGCAAGATTTAGGCTTACTCACGAGACATCTTTTGTGAAAGCACACACCAGCTTTTGGACACGTCTTCCTTTCTTCTTCTATATTAGTTGCTTCTTCAGGCAATTTTATGGGTCTGTTAGTAAGGCTGATTACTTGACGCTACGCAACGGATTCATAACAGTTCATTTAGCACCTGGAAGTAAATTTAACTTCCAGAGATATATCAAAAGGTCATTAGAAGATGACTTCAAGGTAGTTGTCGGTGTGAGTCCTTTTCTGTGGTCGTCATTTGTGATCTTCCTGCTCCTTAATCTATCTGGATGGCATGTATTGTTCTGGGCATCATTTATCCCTCTGCTTATAATCTTAGCTGTTGGATCAAAACTTCAAGCCATTTTGACTAGGATGGCTCTTGAAATCTCTGAGAAACATGCAGTGGTCCAGGGAATTCCACTCGTGCAAGGATCCGACAAGTATTTCTGGTTCGGTCGCCCTCAACTGATTCTTCATCTCATGCATTTTGCTTTATTTCAGAATGCATTCCAGACCACCTATATTTTGTCTACACTGTATTCTTTTGGCCTGAATTCTTGCTTCTTTGATGGTCGCATCGTTACAATTATAAAAGTTGGTTCTGGGGTAGTAGCATTATTTCTATGCAGCTATGTTACGCTTCCGATATACGCCCTTGTAAATCAGATGGGTTCAGGTATGAAGAGGTCCATCTTTGATGAACAGACATCAAAGGCACTCAAGAAATGGCACGAAACGGCCAAGAAGAAGAAGCGGGCTAAACGAGCCTCAGCAACTAAAACCCTCGGAGGTAGTTCAAATGCTTCACCTCTACGCTCCTTTGGACGCTCATTGCGACGGTTTAAAACTACAGGACACTCCATACGCGTGCCTACGTATGAGGACCTTGAGTCGTCTGACTACGAGGGTGATCCATTAGCGACACCTGCACAAGTGTCAACAAGTGAACCGATTAATGTTGATGTAGAAGATGGAGATGAAATACAACAAATTGCTGAAACAGAGCAACCCCACAGTACAATGAAAACTAAAGAAGGAGATGAGTTCTCATTTATAAAGCCTGCACCACTAGGATAA 1734 43.02 MSVLCLCFCLLFAGAAASGGDGGPHSRELDNTPTWAVAAVCFFFILISIVLENVLHKLGTWLTEKHKSSLYEALEKVKAELMILGFISLLLTFAQAYIVQICIPPAIANSMLPCPLKEKDASSSTTDEDEHHRRLQWLIRRSLAGGHNVVSCKDGKVSLISIDGLHQLHILIFFLAVFHVLFSVITMTLGRVKIRGWKEWEQETLTHNYEFFNDPARFRLTHETSFVKAHTSFWTRLPFFFYISCFFRQFYGSVSKADYLTLRNGFITVHLAPGSKFNFQRYIKRSLEDDFKVVVGVSPFLWSSFVIFLLLNLSGWHVLFWASFIPLLIILAVGSKLQAILTRMALEISEKHAVVQGIPLVQGSDKYFWFGRPQLILHLMHFALFQNAFQTTYILSTLYSFGLNSCFFDGRIVTIIKVGSGVVALFLCSYVTLPIYALVNQMGSGMKRSIFDEQTSKALKKWHETAKKKKRAKRASATKTLGGSSNASPLRSFGRSLRRFKTTGHSIRVPTYEDLESSDYEGDPLATPAQVSTSEPINVDVEDGDEIQQIAETEQPHSTMKTKEGDEFSFIKPAPLG 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30787755 30792523 + PI0001059.1 Cmetu06g2483 360145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2483 577 MobiDBLite consensus disorder prediction 464 488 - -
Cmetu06g2483 577 MobiDBLite consensus disorder prediction 513 535 - -
Cmetu06g2483 577 PANTHER MLO-LIKE PROTEIN 1 26 512 IPR004326 GO:0006952|GO:0016020
Cmetu06g2483 577 MobiDBLite consensus disorder prediction 551 577 - -
Cmetu06g2483 577 Pfam Mlo family 27 490 IPR004326 GO:0006952|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2483 K08472 - - csv:101205522 1024.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2483 Cmetu-Chr6:30787755 Cmetu10g0829 Cmetu-Chr10:21721720 7.90E-129 dispersed
Cmetu03g1162 Cmetu-Chr3:6486227 Cmetu06g2483 Cmetu-Chr6:30787755 2.80E-160 transposed
Cmetu06g1305 Cmetu-Chr6:30418796 Cmetu06g2483 Cmetu-Chr6:30787755 3.70E-72 transposed
Cmetu11g1043 Cmetu-Chr11:423801 Cmetu06g2483 Cmetu-Chr6:30787755 9.40E-97 transposed
Cmetu04g2438 Cmetu-Chr4:3304624 Cmetu06g2483 Cmetu-Chr6:30787755 1.50E-171 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1699 . 3 531 MLO family AT5G53760 71.1 1.1e-215 746.5
Cmetu07g1697 . 5 552 MLO family AT5G53760 69.2 7.2e-215 743.8
Cmetu12g1399 . 10 504 MLO family AT3G45290 52.7 1.7e-138 490.0
Cmetu09g1699 . 3 531 MLO family AT1G26700 69.3 3.4e-209 724.9
Cmetu07g1697 . 1 532 MLO family AT1G26700 67.9 3.1e-207 718.4
Cmetu10g0829 . 7 499 MLO family AT2G39200 68.0 3.9e-192 668.3
Cmetu11g1884 . 10 525 MLO family AT2G39200 61.8 9.9e-180 627.1
Cmetu12g0062 . 8 501 MLO family AT2G39200 58.1 1.1e-170 597.0
Cmetu10g0829 . 7 408 MLO family AT1G61560 65.7 9.7e-153 537.0
Cmetu11g1884 . 10 400 MLO family AT1G61560 66.5 1.3e-152 536.6
Cmetu12g0062 . 1 381 MLO family AT1G61560 60.4 4.4e-137 485.0
Cmetu06g2483 . 6 488 MLO family AT2G17430 61.9 1.0e-162 570.5
Cmetu04g2438 . 11 453 MLO family AT2G17430 59.3 2.6e-153 539.3
Cmetu03g1162 . 2 479 MLO family AT2G17430 57.8 4.8e-152 535.0
Cmetu06g2483 . 4 575 MLO family AT2G17480 58.9 2.1e-177 619.4
Cmetu04g2438 . 29 525 MLO family AT2G17480 59.1 1.2e-172 603.6
Cmetu03g1162 . 14 464 MLO family AT2G17480 61.9 3.2e-157 552.4
Cmetu11g1884 . 11 447 MLO family AT2G17480 50.6 5.0e-118 422.2
Cmetu03g1162 . 1 380 MLO family AT1G42560 61.4 2.6e-128 455.7
Cmetu06g2483 . 12 386 MLO family AT1G42560 55.8 1.4e-113 406.8
Cmetu04g2438 . 29 359 MLO family AT1G42560 52.5 1.4e-102 370.2
Cmetu11g1043 . 6 419 MLO family AT4G24250 54.2 8.3e-117 417.5
Cmetu11g0990 . 15 430 MLO family AT4G24250 50.8 4.4e-110 395.2
Cmetu06g2483 . 6 386 MLO family AT5G65970 65.2 2.9e-140 495.7
Cmetu04g2438 . 9 360 MLO family AT5G65970 60.0 2.9e-124 442.6
Cmetu03g1162 . 11 380 MLO family AT5G65970 59.0 1.3e-121 433.7
Cmetu11g1884 . 7 365 MLO family AT5G65970 51.2 1.0e-97 354.4
Cmetu03g1162 . 14 542 MLO family AT2G33670 60.4 9.2e-174 607.1
Cmetu06g2483 . 19 469 MLO family AT2G33670 58.1 1.4e-142 503.4
Cmetu04g2438 . 19 465 MLO family AT2G33670 55.8 2.3e-140 496.1
Cmetu10g0829 . 64 520 MLO family AT1G11310 64.1 9.1e-169 590.5
Cmetu11g1884 . 48 515 MLO family AT1G11310 62.2 2.0e-163 572.8
Cmetu12g0062 . 63 471 MLO family AT1G11310 59.3 5.4e-145 511.5
Cmetu11g1043 . 5 509 MLO family AT2G44110 58.0 7.0e-166 580.9
Cmetu11g1043 . 1 485 MLO family AT4G02600 75.9 5.2e-212 734.2
Cmetu06g0876 . 3 507 MLO family AT1G11000 73.3 1.5e-212 736.1
Cmetu07g0921 . 38 172 MLO family AT1G11000 71.1 1.5e-47 188.0
Cmetu11g1043 . 1 485 MLO family AT4G02600 75.9 5.2e-212 734.2
Cmetu10g0829 . 64 520 MLO family AT1G11310 64.1 9.1e-169 590.5
Cmetu11g1884 . 48 515 MLO family AT1G11310 62.2 2.0e-163 572.8
Cmetu12g0062 . 63 471 MLO family AT1G11310 59.3 5.4e-145 511.5
Cmetu12g1399 . 10 504 MLO family AT3G45290 52.7 1.7e-138 490.0
Cmetu06g0876 . 3 507 MLO family AT1G11000 73.3 1.5e-212 736.1
Cmetu07g0921 . 38 172 MLO family AT1G11000 71.1 1.5e-47 188.0
Cmetu03g1162 . 14 542 MLO family AT2G33670 60.4 9.2e-174 607.1
Cmetu06g2483 . 19 469 MLO family AT2G33670 58.1 1.4e-142 503.4
Cmetu04g2438 . 19 465 MLO family AT2G33670 55.8 2.3e-140 496.1
Cmetu10g0829 . 7 408 MLO family AT1G61560 65.7 9.7e-153 537.0
Cmetu11g1884 . 10 400 MLO family AT1G61560 66.5 1.3e-152 536.6
Cmetu12g0062 . 1 381 MLO family AT1G61560 60.4 4.4e-137 485.0
Cmetu06g2483 . 6 488 MLO family AT2G17430 61.9 1.0e-162 570.5
Cmetu04g2438 . 11 453 MLO family AT2G17430 59.3 2.6e-153 539.3
Cmetu03g1162 . 2 479 MLO family AT2G17430 57.8 4.8e-152 535.0
Cmetu06g2483 . 4 575 MLO family AT2G17480 58.9 2.1e-177 619.4
Cmetu04g2438 . 29 525 MLO family AT2G17480 59.1 1.2e-172 603.6
Cmetu03g1162 . 14 464 MLO family AT2G17480 61.9 3.2e-157 552.4
Cmetu11g1884 . 11 447 MLO family AT2G17480 50.6 5.0e-118 422.2
Cmetu03g1162 . 1 380 MLO family AT1G42560 61.4 2.6e-128 455.7
Cmetu06g2483 . 12 386 MLO family AT1G42560 55.8 1.4e-113 406.8
Cmetu04g2438 . 29 359 MLO family AT1G42560 52.5 1.4e-102 370.2
Cmetu06g2483 . 6 386 MLO family AT5G65970 65.2 2.9e-140 495.7
Cmetu04g2438 . 9 360 MLO family AT5G65970 60.0 2.9e-124 442.6
Cmetu03g1162 . 11 380 MLO family AT5G65970 59.0 1.3e-121 433.7
Cmetu11g1884 . 7 365 MLO family AT5G65970 51.2 1.0e-97 354.4
Cmetu09g1699 . 3 531 MLO family AT5G53760 71.1 1.1e-215 746.5
Cmetu07g1697 . 5 552 MLO family AT5G53760 69.2 7.2e-215 743.8
Cmetu10g0829 . 7 499 MLO family AT2G39200 68.0 3.9e-192 668.3
Cmetu11g1884 . 10 525 MLO family AT2G39200 61.8 9.9e-180 627.1
Cmetu12g0062 . 8 501 MLO family AT2G39200 58.1 1.1e-170 597.0
Cmetu11g1043 . 6 419 MLO family AT4G24250 54.2 8.3e-117 417.5
Cmetu11g0990 . 15 430 MLO family AT4G24250 50.8 4.4e-110 395.2
Cmetu09g1699 . 3 531 MLO family AT1G26700 69.3 3.4e-209 724.9
Cmetu07g1697 . 1 532 MLO family AT1G26700 67.9 3.1e-207 718.4
Cmetu11g1043 . 5 509 MLO family AT2G44110 58.0 7.0e-166 580.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000765 3 4 3 4 2 3 4 3 3 3 2 3 4 3 3 4 2 3 4 3 3 3 3 3 3 3 2 6 2 2 93