Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2561 ATGAAAACCTCAACCTCCCTTCTCCCAAGTTCTATCCTCCTCATCTCCATCTTCATCCTCCTCTTCCAACCTTCCCATCAAGAGACTCCGTCGCCACCGCCGCCATTTCTCCCGAACCCCAGACTTCTTAAGGCCTACACCGCTCTCCAAGCTTGGAAACATGCCATCACTGCAGACCCAGCTAACTTCACTGCCAATTGGTACGGCCCCAACGTCTGCAACTACTCCGGCGTTTTCTGCGCCCCCGCCCCCGACGACCCCGACATCCTCACTGTCGCCGGGATCGACCTCAACCATGCCAACATCTCCGGCACCCTGCCTGACGACCTCGGCCTCCTCACCGACCTTTCTCTGTTCCACATCAACTCTAATCGCTTCTGCGGCACCATCCCCAATTCCTTCCGCTGCCTCACTCTCCTCTTCGAACTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTATCTCTCCCAGCTCTCAAATTCCTCGACATTCGATTCAACAAATTCAGCGGCGATATCCCTTCTTCTCTATTTGACTTGAAACTTGATGCTCTGTTCATCAACAACAACGATTTCAAATTTTCCTTACCGGAAAACATCGGCAATTCCCCTATTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCTAGTATATCAAATATGAACACCACACTCAATGAAATTATAATCACGAGTAGTGGGTTGATTGGGTGTTTACCGCCGGAAATTGGGTCGTTGAGCAATCTCACTGTCTTCGATGTCAGCGATAATAATCTCGTCGGACCGTTACCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAAATTCCGGCGAGTATTTGCTCGTTGCCGAAATTGCAAAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTTTGCTTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCATTCCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGATGTACTCTTCGGCCACCACCGCCACTGCCACCGCCGCCGCCGCCGCCTTATTAG 1143 50.13 MKTSTSLLPSSILLISIFILLFQPSHQETPSPPPPFLPNPRLLKAYTALQAWKHAITADPANFTANWYGPNVCNYSGVFCAPAPDDPDILTVAGIDLNHANISGTLPDDLGLLTDLSLFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFSGDIPSSLFDLKLDALFINNNDFKFSLPENIGNSPISVLVFANNNINGCLPSSISNMNTTLNEIIITSSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPERPFQRSPEECKAFYSYPVDCGVFGCTLRPPPPLPPPPPPPY 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3970243 3971430 + PI0011239.1 Cmetu06g2561 360223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2561 380 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 375 - -
Cmetu06g2561 380 Pfam Leucine rich repeat 234 293 IPR001611 GO:0005515
Cmetu06g2561 380 Gene3D Ribonuclease Inhibitor 44 210 IPR032675 -
Cmetu06g2561 380 Gene3D Ribonuclease Inhibitor 211 350 IPR032675 -
Cmetu06g2561 380 FunFam Leucine-rich repeat extensin-like protein 1 46 207 - -
Cmetu06g2561 380 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 231 320 - -
Cmetu06g2561 380 Pfam Leucine rich repeat N-terminal domain 47 80 IPR013210 -
Cmetu06g2561 380 SUPERFAMILY L domain-like 45 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2561 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1704 Cmetu-Chr2:1698929 Cmetu06g2561 Cmetu-Chr6:3970243 9.50E-26 dispersed
Cmetu05g1810 Cmetu-Chr5:448701 Cmetu06g2561 Cmetu-Chr6:3970243 3.00E-21 dispersed
Cmetu06g2561 Cmetu-Chr6:3970243 Cmetu11g0801 Cmetu-Chr11:3036367 3.60E-37 dispersed
Cmetu06g2561 Cmetu-Chr6:3970243 Cmetu05g0289 Cmetu-Chr5:864316 2.80E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0289 . 72 241 Leucine-rich Repeat extension Gene Families AT1G62440 72.4 1.3e-44 178.7
Cmetu01g0388 . 42 371 Leucine-rich Repeat extension Gene Families AT1G62440 58.2 1.2e-42 172.2
Cmetu02g0637 . 54 224 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 1.3e-41 168.7
Cmetu02g0637 . 18 397 Leucine-rich Repeat extension Gene Families AT4G13340 76.1 6.5e-70 262.7
Cmetu05g0289 . 37 422 Leucine-rich Repeat extension Gene Families AT4G13340 72.4 1.6e-65 248.1
Cmetu11g0801 . 14 274 Leucine-rich Repeat extension Gene Families AT4G13340 50.6 1.5e-47 188.3
Cmetu01g0388 . 42 372 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 3.9e-43 173.7
Cmetu06g2561 . 39 364 Leucine-rich Repeat extension Gene Families AT4G13340 57.8 2.5e-37 154.5
Cmetu05g0289 . 47 418 Leucine-rich Repeat extension Gene Families AT3G24480 75.5 1.8e-76 283.9
Cmetu02g0637 . 22 391 Leucine-rich Repeat extension Gene Families AT3G24480 76.0 1.3e-74 277.7
Cmetu01g0388 . 42 372 Leucine-rich Repeat extension Gene Families AT3G24480 60.2 4.0e-44 176.4
Cmetu06g2561 . 33 364 Leucine-rich Repeat extension Gene Families AT3G24480 54.1 6.1e-37 152.5
Cmetu06g2561 . 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 69.1 4.4e-61 232.6
Cmetu01g0388 . 39 371 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 7.8e-50 195.3
Cmetu02g0637 . 64 398 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 8.1e-39 158.7
Cmetu06g2561 . 5 365 Leucine-rich Repeat extension Gene Families AT5G25550 62.8 1.6e-41 167.5
Cmetu02g0637 . 38 397 Leucine-rich Repeat extension Gene Families AT5G25550 61.3 8.0e-41 165.2
Cmetu05g0289 . 58 408 Leucine-rich Repeat extension Gene Families AT5G25550 60.8 2.8e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37