Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2572 ATGATAGCATTTTTTTTCTTTTCTTTTCTTTTCTTTTGTTTTTTTTGGTTGAGGTACTCCATGACAGCAATTGAGCGCATACTATCCTATAAGTTTAAGAACAAGAAGCTGTTGGAAGAAGCCCTCACCCACTCCTCCTACCCCAATTCTGCCTCCTATGACCGCCTCGCGTTCATCGGCGATTCAGCTATTGGCCTCGCTATTTCCAATTACATTTTTCCCCTTTATCCGGACCTCGATAAAGGTCAGCTCACTTTACTTAGGGCTGCTAACGTTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCTCCATGGATTGTATGATTATGTTAGGCGCAACGCAGCCGATCTCGATGATAAGGTTAGAGAGTTTGCCGATGCCGTCGCTCTAGAAGACAACTCAATTCCCTATGGTGGGTTGGTGAAGGCTCCTAAGGTTCTTGCTGACATTGTGGAATCTGTGGCTGGTGCTATCTATGTAGATGTTGAGTTTGACCTTCAAAAACTATGGTCGATTATTAAGGATTTATTAGAGCCTATCTATACTCCTGAAGACTTAGAGGCAGATCCCCAACCTGTAACTCTGCTCTTTGAAGTTTGCCAAAAAAATGGGAAGCAGGTTGATATTAAGAATCAGGAAAAGGGTTCCAAGAATGTCGCGAGTGTCTATGTTGACGGTACGTTAGTTGCTTCTGGCTTTTCGAAGCAAAGACCAATCGCAAGGCTTAATGCTGCCAGAGAAGCTCTCATCAAATTGTCGGATTCTATGGATACCAAAATTAAAACGGTTGTAACTATTGATGGTATTGATGGTTCGTTTGAAATTGAAGGGGCAAAGCAGAAGCTACATGTTTTTTGTTGCCAGAAAAAGTGGCAGAATCCAATTTACAGCATTGAGAAAGTTCTTGGACCCCCACATGAAAGAAGATTTGTTTGCTCTGTTAAAATTCCCACTTATAATGGTACGCACTCTATAATCGGAGATGAGAAGTCAAGAGTAAAAGAGGCAAAGAACTCTGCAGCCTCTTCGATGATTCGCAATTTACAGGAAAGAAAGTATCTGTAA 1065 42.16 MIAFFFFSFLFFCFFWLRYSMTAIERILSYKFKNKKLLEEALTHSSYPNSASYDRLAFIGDSAIGLAISNYIFPLYPDLDKGQLTLLRAANVSTEKLARVAVLHGLYDYVRRNAADLDDKVREFADAVALEDNSIPYGGLVKAPKVLADIVESVAGAIYVDVEFDLQKLWSIIKDLLEPIYTPEDLEADPQPVTLLFEVCQKNGKQVDIKNQEKGSKNVASVYVDGTLVASGFSKQRPIARLNAAREALIKLSDSMDTKIKTVVTIDGIDGSFEIEGAKQKLHVFCCQKKWQNPIYSIEKVLGPPHERRFVCSVKIPTYNGTHSIIGDEKSRVKEAKNSAASSMIRNLQERKYL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26401784 26403612 + PI0028362.1 Cmetu06g2572 360234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2572 354 SMART DRBM_3 192 253 IPR014720 -
Cmetu06g2572 354 SMART DRBM_3 278 349 IPR014720 -
Cmetu06g2572 354 FunFam Endoribonuclease dicer-like 1 17 184 - -
Cmetu06g2572 354 SUPERFAMILY RNase III domain-like 15 182 IPR036389 GO:0004525|GO:0006396
Cmetu06g2572 354 ProSiteProfiles Ribonuclease III family domain profile. 21 163 IPR000999 GO:0004525|GO:0006396
Cmetu06g2572 354 Pfam Double-stranded RNA binding motif 192 252 IPR014720 -
Cmetu06g2572 354 Pfam Double-stranded RNA binding motif 278 348 IPR014720 -
Cmetu06g2572 354 Gene3D - 188 263 - -
Cmetu06g2572 354 Pfam Ribonuclease III domain 54 161 IPR000999 GO:0004525|GO:0006396
Cmetu06g2572 354 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 277 350 IPR014720 -
Cmetu06g2572 354 Gene3D - 275 351 - -
Cmetu06g2572 354 SMART riboneu5 36 186 IPR000999 GO:0004525|GO:0006396
Cmetu06g2572 354 CDD RIBOc 36 186 IPR000999 GO:0004525|GO:0006396
Cmetu06g2572 354 PANTHER DICER-RELATED 23 254 - -
Cmetu06g2572 354 Gene3D Ribonuclease III domain 17 186 IPR036389 GO:0004525|GO:0006396
Cmetu06g2572 354 SUPERFAMILY dsRNA-binding domain-like 277 351 - -
Cmetu06g2572 354 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 191 254 IPR014720 -
Cmetu06g2572 354 SUPERFAMILY dsRNA-binding domain-like 145 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2572 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2105 Cmetu-Chr1:3443517 Cmetu06g2572 Cmetu-Chr6:26401784 1.60E-42 dispersed
Cmetu06g1437 Cmetu-Chr6:29036 Cmetu06g2572 Cmetu-Chr6:26401784 4.20E-33 dispersed
Cmetu06g0668 Cmetu-Chr6:26396485 Cmetu06g2572 Cmetu-Chr6:26401784 2.10E-131 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42