Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2632 ATGTGGCTTTCTCTAGGTATCCGTTTTCCCCATCTAACCTTATCTCAATCTCTTCCGCCGCCGGAAAAATGGGGAAGGCGGTGGTATATGTTTACAGCCACCGCCTTCGCTGTATTCTTCCTAATTTCTTCCTCCAATTTCAACAATCGGAACCATCAACAACCAACTCGTCGTCTAGGGTTCAAATTCCCAAACCCTACTTTCGATCCTCTTGTTACAGAAATGGAGAGATTAGCAGCAGAGGAACGTGGTGAAAATGAGATTGGAGTGGAAAATCAAAATCATAAGATTCCTGATGCTTATAGAAATTACTACGATGAAGGGAGATTGAACATTTCGTTGAGGTTACTTGTGTTGTTTCCTTTCCTGGATCATTCGCCTAAAGATGGGGTTATCAGTTATGAGGAGTTGAGTGATTGGATTAATGGGCAAGCTATTGAAAGATTGAATTATAGAACGAGGCAACAATTGGAGTTCTACGATAAGAATGGAGATGGCGCCATTTCATTCCATGAATATCTGCCGCAGTTCACTGAGGAAGATATTGCAAGAAATGAAACGGGATATGGAGAAGCTGGATGGTGGAGAAAGCAATTCACAAATGCGGATGTTGACCAGAATGGCTTACTATATTTTGATGAACTGAAAGATTTCCTTCACCCAGAAGATAGCAGCAATTACCGAATACAAAACTGGCTGTTGGCACAGAAAATGAAGCGCATGGACCATGACAGAGATGGAAAGCTCAATTTTGATGAATTCCTTCACCATACATATGATATATACAAGAACTATATCGAGTTTGAAACTCAAGGCGATGACGTTCCGAGCGCTGAAGAGAAATTTGATGAGCTTGATCTTGACGAGGATGAAGTATTGTCAGTGGAAGAATTAAGACCATTGTTCCAGTATCTTCATCCTGGAGAAGTGTCTTATGCTCAACATTACACAAGTCATTTGATTAATGAGGCTGATGACAATAAAGATGGGTACTTAACACTTGATGAAATGCTTAATCATGAGTATGTTTTCTACAGCACAGTATATGAAAATCAGAATGGAGATTATGAAGATGATTACCATGATGAACTTTGA 1095 39.91 MWLSLGIRFPHLTLSQSLPPPEKWGRRWYMFTATAFAVFFLISSSNFNNRNHQQPTRRLGFKFPNPTFDPLVTEMERLAAEERGENEIGVENQNHKIPDAYRNYYDEGRLNISLRLLVLFPFLDHSPKDGVISYEELSDWINGQAIERLNYRTRQQLEFYDKNGDGAISFHEYLPQFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLYFDELKDFLHPEDSSNYRIQNWLLAQKMKRMDHDRDGKLNFDEFLHHTYDIYKNYIEFETQGDDVPSAEEKFDELDLDEDEVLSVEELRPLFQYLHPGEVSYAQHYTSHLINEADDNKDGYLTLDEMLNHEYVFYSTVYENQNGDYEDDYHDEL 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8343464 8348104 - PI0024385.1 Cmetu06g2632 360294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2632 364 ProSiteProfiles EF-hand calcium-binding domain profile. 234 264 IPR002048 GO:0005509
Cmetu06g2632 364 SUPERFAMILY EF-hand 192 355 IPR011992 -
Cmetu06g2632 364 SMART efh_1 152 180 IPR002048 GO:0005509
Cmetu06g2632 364 SMART efh_1 233 261 IPR002048 GO:0005509
Cmetu06g2632 364 SMART efh_1 316 344 IPR002048 GO:0005509
Cmetu06g2632 364 SMART efh_1 277 305 IPR002048 GO:0005509
Cmetu06g2632 364 SMART efh_1 194 222 IPR002048 GO:0005509
Cmetu06g2632 364 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Cmetu06g2632 364 Pfam EF-hand domain pair 279 339 IPR002048 GO:0005509
Cmetu06g2632 364 SUPERFAMILY EF-hand 115 175 IPR011992 -
Cmetu06g2632 364 Gene3D - 259 342 - -
Cmetu06g2632 364 Gene3D - 115 175 - -
Cmetu06g2632 364 ProSitePatterns EF-hand calcium-binding domain. 242 254 IPR018247 -
Cmetu06g2632 364 ProSiteProfiles EF-hand calcium-binding domain profile. 273 308 IPR002048 GO:0005509
Cmetu06g2632 364 Pfam EF hand 157 172 IPR002048 GO:0005509
Cmetu06g2632 364 Pfam EF hand 238 254 IPR002048 GO:0005509
Cmetu06g2632 364 ProSitePatterns EF-hand calcium-binding domain. 325 337 IPR018247 -
Cmetu06g2632 364 Gene3D - 176 258 - -
Cmetu06g2632 364 PANTHER RETICULOCALBIN 76 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2632 K23901 - - csv:101207354 640.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2632 Cmetu-Chr6:8343464 Cmetu10g1848 Cmetu-Chr10:16978903 1.10E-35 dispersed
Cmetu06g2632 Cmetu-Chr6:8343464 Cmetu09g0253 Cmetu-Chr9:10108117 6.30E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29