Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu06g2692 ATGGCGACGGAGACTTGTCCACAGGCCTACGGCGAGCCCTCGTATTGGGACAATCGCTATTCCAATGAATCTGGCCCCTTCGACTGGTACCAGAAGTATCATTCCTTGGCGCCATTGATCAATCTCTATGTCTCTCGCCATCATCGCATCCTCGCCGTCGGTTGCGGCAACTCAGCATTTAGCGAAGGTATGGTCGATGATGGCTATGAGGATGTAGTCAATGTTGATATATCATCTGTTGTGATTGAAGCAATGCAGAAAAAGTATTGTAATCTTCCGCAGTTGAAATATGTGAGAATGGATGTTCGTGATATGAGTACATTTGAAACATGTTCTTTCCAGGCCGTTCTTGACAAAGGTACCCTAGACTCTCTATTGTGTGGAAATAATTCACGAGAAAATGCGACTAGGATGCTCGAAGAAGTTTGGAGGGTCCTCAAGGAAAATGGAGTATATATTTTGGTTACATATGGAGCTCCCACGTATAGACTAAGTCTACTGAAACGTACTTTCTCATTGATAAAGCTTCATGTCATAGACAAATTTGTTTCAGAGAAAAGGACTGACCCTCCAAAATGGGACCTCTTGAAACCTGTTCCATTTGACAACGATGCGAGGTCGCTAGAAACTATGCTCGGGCAGAATCCTGATGTCCACTATGTATACATCTGTACGAAGGATTCTTCTTTGAAGACAGACCAAAAGCATGATGTTGCTGTTGAGTGA 726 43.66 MATETCPQAYGEPSYWDNRYSNESGPFDWYQKYHSLAPLINLYVSRHHRILAVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMQKKYCNLPQLKYVRMDVRDMSTFETCSFQAVLDKGTLDSLLCGNNSRENATRMLEEVWRVLKENGVYILVTYGAPTYRLSLLKRTFSLIKLHVIDKFVSEKRTDPPKWDLLKPVPFDNDARSLETMLGQNPDVHYVYICTKDSSLKTDQKHDVAVE 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5733627 5736568 - PI0002340.1 Cmetu06g2692 360354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu06g2692 241 Gene3D Vaccinia Virus protein VP39 8 239 IPR029063 -
Cmetu06g2692 241 CDD AdoMet_MTases 49 157 - -
Cmetu06g2692 241 Pfam Methyltransferase domain 51 153 IPR013216 GO:0008168
Cmetu06g2692 241 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 7 227 - -
Cmetu06g2692 241 FunFam S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 8 198 - -
Cmetu06g2692 241 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 9 183 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu06g2692 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2293 Cmetu-Chr1:25834928 Cmetu06g2692 Cmetu-Chr6:5733627 1.60E-36 dispersed
Cmetu09g0757 Cmetu-Chr9:15252031 Cmetu06g2692 Cmetu-Chr6:5733627 1.50E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g246 . . . . . . . . . . . Cma14g01563 . Car14g01380 Sed02g1116 . Cpe03g01308 Bhi01g01121 Tan10g1110 Cmetu06g2692 . Hepe05g1350 . Lcy11g1311 . . . . . . . . . . . Lsi05g01392 . . Cme06g00825 . . . . . . . . . . Cmo14g01599 . . Car08g01105 . Cpe12g00279 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007366 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 35