Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0067 ATGGCGGAGGTCAATGCTATGATGATTTGTGCTCGCTGTAATTTTATGGTGAAAAACCCTGTGTTGGATGTGAAGCGTTTGGGTTTTCGGATGCCGGTTATGGGTCGCCGAACAGTTTGGTGTAATCGGAGGAGGATGAAGGGGAGAGTTGGAACTGGAGTGAGGGCGACAATGCAGGTTGATTTGGAGGATGAGGAGAGGTTGAAAAGATTGGAGGGTTTAGAGGTGACGTTAGGGCTTGATGTTGTGGCGGAGAGGGAATTGAAGGAGAAAGGGTTTTTAGGGATGAGGAAGACCAAGCTTGTATGTACTATTGGTCCAGCGTGTAGTGGGATTGAGGATTTGGAGAAGTTAGCGTTGGAAGGTATGAATATTGCGAGATTGAATATGTGTCACAACTCCAGGGAGTGGCATTGTGATATGATTAAGAAAATCAAGAAGTTAAATGAGGAGAAAGGATTCTGTATTTCGGTTATGATTGATATTGAGGGAAGTCGGATTCATGTGGTTGATCATGGATCTCCTTCCTCTGTAAAAGTTGAGGATGGTTCAATCTGGTTGTTTACTGCTGAGAAATTCGACGGTTCTCGTCCATTCACTGTGCAAGCGAGCTATGAAGGTTTCTCTGAAGGTATCCGAGTGGGTGATTCAATTGTAATTGACGGGGGAATGGCAACCTTTGAAGTTATTGAAAAGATTGGGAATGATTTAAGCTGCAGGTGCACAGACCCAGGTTTATTTCTTCCTCGGGCGAAGTGTAGCTTTTGGAGAGATGGGAGGCTTGTTATGAGAAATCACGAATCTCCCACGTTGTCAAGTAAGGATTGGTCGGACATTGAATTTGGAATTTCAGGAGGCGTGGACTTCATTGCCCTTTCCTTTGTGAACAGTGCAGATCCTGTCAGGCATCTAAAGAACTACCTTTTAACAAAATCAGCAAAATCCATAAGGGTATTGGCTAAGATTGAAAGCTTGGAGGCCCTTCAAAATCTGGAAGAAATTATAGAGGCCTCTGATGGAATCATGGTGGCTCGAGGGGACCTTGGGGTCGAAATTCCGCTCGAGCAGATACCGGCAGTGCAAGAGGAAATAACCACTGTCTGTAGGGAACTGAACAAACCAGTGATCATAGCTTCTCAACTTCTAGAGTCCATGGTTGAATATCCTACTCCAACACGTGCTGAGGTTGCAGATGTTTCTGAGGCTGTCCGACAATATGCTGATGCATTGATGCTATCTGGGGAGTCTGCCATAGGATCATATGGACAGAAAGCACTTTCGGTTCTACAGATGGCCAGCAGCCGAATGGAATTATGGAGTCGTGAAGAAAATAGGAAAAATTTCCTTCCCAGCATCAACTTGGGGTGTCATTGCATGATCGCATTGCAGAAGAAATTTGCAATTCTGCAGCTGAATTGGCTAACAGACTTTCAGTAG 1437 44.82 MAEVNAMMICARCNFMVKNPVLDVKRLGFRMPVMGRRTVWCNRRRMKGRVGTGVRATMQVDLEDEERLKRLEGLEVTLGLDVVAERELKEKGFLGMRKTKLVCTIGPACSGIEDLEKLALEGMNIARLNMCHNSREWHCDMIKKIKKLNEEKGFCISVMIDIEGSRIHVVDHGSPSSVKVEDGSIWLFTAEKFDGSRPFTVQASYEGFSEGIRVGDSIVIDGGMATFEVIEKIGNDLSCRCTDPGLFLPRAKCSFWRDGRLVMRNHESPTLSSKDWSDIEFGISGGVDFIALSFVNSADPVRHLKNYLLTKSAKSIRVLAKIESLEALQNLEEIIEASDGIMVARGDLGVEIPLEQIPAVQEEITTVCRELNKPVIIASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGSYGQKALSVLQMASSRMELWSREENRKNFLPSINLGCHCMIALQKKFAILQLNWLTDFQ 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 249047 253431 + PI0013825.1 Cmetu07g0067 360548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0067 478 PANTHER PYRUVATE KINASE 82 443 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 Pfam Pyruvate kinase, barrel domain 96 434 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Cmetu07g0067 478 Gene3D - 165 269 IPR015806 GO:0004743|GO:0006096
Cmetu07g0067 478 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 91 437 IPR015813 GO:0003824
Cmetu07g0067 478 FunFam Pyruvate kinase 270 436 - -
Cmetu07g0067 478 PRINTS Pyruvate kinase family signature 287 301 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 PRINTS Pyruvate kinase family signature 154 170 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 NCBIfam pyruvate kinase 97 439 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu07g0067 478 FunFam Pyruvate kinase 165 269 - -
Cmetu07g0067 478 SUPERFAMILY PK beta-barrel domain-like 167 254 IPR011037 -
Cmetu07g0067 478 Gene3D - 97 436 IPR040442 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0067 K00873 - - csv:101220786 847.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0533 Cmetu-Chr5:19053226 Cmetu07g0067 Cmetu-Chr7:249047 3.20E-133 dispersed
Cmetu06g0978 Cmetu-Chr6:7686416 Cmetu07g0067 Cmetu-Chr7:249047 4.10E-69 dispersed
Cmetu07g0067 Cmetu-Chr7:249047 Cmetu10g0537 Cmetu-Chr10:17056685 3.90E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g773 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00959 Cam10g0982 Cec10g1013 . Clacu10g1004 Cmu10g1787 Cre10g1160 . . . . . . . . . . . . . . . . Sed13g0418 Cmo04g00460 Cmo16g00321 . . . . Cpe14g00251 Cpe01g00386 Bhi11g01099 Tan01g0602 Cmetu07g0067 . . Mch10g0406 . . . . . . . . Lsi03g01004 . . Cme07g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30