Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0147 ATGGGGGGTTCTGGGAAATGGATGAAGATGTTTATAGGACAAAGGAAGTCTGATAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAAGTTATGGAGGAGCCCATCAGGGGACTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTAGAGCCGCTGATTCTTTTACTGCTGCTGTTGCCACTGTCCTCCGTGCTCCACCGAGGAATTTCCGGGTTGTCCGCCAAGAATGGGCTGCAATTAGGATTCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTTGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAACAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGTGTCAGAGCACGTCGTGTGAGGATGTCGGTCGAGGGGCAGGCTGTACAACAATTGCTTAACGTACATCGCAGCAAGGCCGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACACCAAACTCAACTTCACGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAAACAAGGTTGATGGAACAATCTCGTGCCGAATCATTTGATGTCACTCCGCCTTCAAAGAGCTGTATAGAATCTGTTGTGTCTAAACATTCCAAAGGTTCTGAACCAGGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCTTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCCGCATCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCGAGTTACATGAACCTTACCGAGTCAACAAAGGCGAAGCAAAAGACAAATAGTCATCTATCGCATCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGCTCTGATTCATCAGTCAATCCCTTTAAGCCAATGATGATTCCAACACGGTCGGATAAGAATGGAACAAAGTTAAGGTCATGA 1338 46.19 MGGSGKWMKMFIGQRKSDKEDNEKLGSTKTKKWKLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPRNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNVHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRAESFDVTPPSKSCIESVVSKHSKGSEPGLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPMMIPTRSDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23379390 23381217 - PI0012844.1 Cmetu07g0147 360628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0147 445 MobiDBLite consensus disorder prediction 274 290 - -
Cmetu07g0147 445 SMART iq_5 112 133 IPR000048 GO:0005515
Cmetu07g0147 445 SMART iq_5 89 111 IPR000048 GO:0005515
Cmetu07g0147 445 PANTHER IQ-DOMAIN 5-RELATED 1 410 - -
Cmetu07g0147 445 MobiDBLite consensus disorder prediction 342 382 - -
Cmetu07g0147 445 MobiDBLite consensus disorder prediction 12 30 - -
Cmetu07g0147 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Cmetu07g0147 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Cmetu07g0147 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Cmetu07g0147 445 MobiDBLite consensus disorder prediction 306 326 - -
Cmetu07g0147 445 MobiDBLite consensus disorder prediction 1 31 - -
Cmetu07g0147 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Cmetu07g0147 445 MobiDBLite consensus disorder prediction 342 445 - -
Cmetu07g0147 445 MobiDBLite consensus disorder prediction 389 429 - -
Cmetu07g0147 445 FunFam IQ-domain 11 89 140 - -
Cmetu07g0147 445 MobiDBLite consensus disorder prediction 272 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0147 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0147 Cmetu-Chr7:23379390 Cmetu09g0362 Cmetu-Chr9:17585457 5.00E-30 dispersed
Cmetu02g0865 Cmetu-Chr2:7898240 Cmetu07g0147 Cmetu-Chr7:23379390 1.60E-41 transposed
Cmetu04g0228 Cmetu-Chr4:1795860 Cmetu07g0147 Cmetu-Chr7:23379390 3.60E-24 transposed
Cmetu07g1332 Cmetu-Chr7:7810911 Cmetu07g0147 Cmetu-Chr7:23379390 9.80E-18 transposed
Cmetu11g0481 Cmetu-Chr11:2381900 Cmetu07g0147 Cmetu-Chr7:23379390 1.40E-20 transposed
Cmetu12g0772 Cmetu-Chr12:2042232 Cmetu07g0147 Cmetu-Chr7:23379390 1.80E-11 transposed
Cmetu01g0987 Cmetu-Chr1:28703466 Cmetu07g0147 Cmetu-Chr7:23379390 6.20E-62 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0768 . 112 281 IQD Protein Family AT3G09710 58.2 7.1e-51 198.7
Cmetu09g0362 . 1 470 IQD Protein Family AT3G52290 53.3 3.8e-99 359.0
Cmetu02g0865 . 1 408 IQD Protein Family AT3G22190 57.1 2.2e-96 349.7
Cmetu07g0147 . 1 438 IQD Protein Family AT2G26180 60.2 2.3e-117 419.5
Cmetu07g1332 . 40 216 IQD Protein Family AT2G33990 55.0 5.4e-48 188.3
Cmetu07g1332 . 43 216 IQD Protein Family AT3G15050 63.3 9.0e-56 214.2
Cmetu11g0481 . 1 511 IQD Protein Family AT4G00820 50.6 5.9e-110 395.2
Cmetu06g1191 . 1 467 IQD Protein Family AT4G00820 50.3 6.9e-103 371.7
Cmetu02g1708 . 1 375 IQD Protein Family AT3G16490 50.1 1.9e-62 236.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39