Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0235 ATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCTCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGGACAATACTTAAGGATCCTGAATTCAGTAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGATCTCGAGAAAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAGAAAAGACGAGAATGCTGTGGCTACAAGTGTTGCTGCCCAAAGTGAAGACGAATTGGCAGAAGCTAAGTCTGTTTCCCTTTCCTCGGATATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGGCTGGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCGTATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTTCTGTGGCGCCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGAAGACCAGCAAAAAGCTACTATAAGAGCTGACAAGGATGAAATGTGTATTCTTGCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTTGCAGAAGCAGAAGCAGCAATTGCAGAAGCTGA 771 44.49 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPRKDENAVATSVAAQSEDELAEAKSVSLSSDIKQITGPKRSNVRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPSVAPSERRSSMLLLEDQQKATIRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVCRSRSSNCRS 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 367169 373698 + PI0017799.1 Cmetu07g0235 360716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0235 256 Pfam linker histone H1 and H5 family 124 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu07g0235 256 Gene3D - 2 59 - -
Cmetu07g0235 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cmetu07g0235 256 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cmetu07g0235 256 Gene3D - 116 195 IPR036388 -
Cmetu07g0235 256 SUPERFAMILY Winged helix DNA-binding domain 117 192 IPR036390 -
Cmetu07g0235 256 PANTHER SINGLE MYB HISTONE 4 1 249 IPR044597 GO:0003691
Cmetu07g0235 256 FunFam Telomere repeat-binding factor 1 2 58 - -
Cmetu07g0235 256 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cmetu07g0235 256 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cmetu07g0235 256 SMART sant 4 59 IPR001005 -
Cmetu07g0235 256 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu07g0235 256 CDD SANT_TRF 6 56 - -
Cmetu07g0235 256 FunFam Telomere repeat-binding factor 1 117 203 - -
Cmetu07g0235 256 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu07g0235 256 FunFam Telomere repeat-binding factor 1 8 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0235 K09422 - - csv:101218411 421.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0068 Cmetu-Chr4:12021055 Cmetu07g0235 Cmetu-Chr7:367169 5.30E-30 dispersed
Cmetu05g0281 Cmetu-Chr5:19742971 Cmetu07g0235 Cmetu-Chr7:367169 3.10E-06 transposed
Cmetu07g0235 Cmetu-Chr7:367169 Cmetu08g1550 Cmetu-Chr8:20287145 2.20E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0235 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 60.5 7.4e-78 287.7
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.5 5.7e-62 235.0
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.2e-65 245.4
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 5.4e-57 218.4
Cmetu04g0068 . 1 278 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 1.4e-68 256.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8190 PF00538 Linker_histone 1.20E-07 CL0123 Cmetu TF