Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0313 ATGGAAAACCCCTTTTCATCAAAGGAGGAAGGGATGGTGTCTTGGGGGCCTTCGAGAACTCAGGCCGAAACTCTGACTTCTACTGACGTTGGAATGAGGATTCTGAGTCCTGAAGATGTGCTTCATAGTTTCTCAGAGCTGATGAGTTTTGATTCTTATGCGGGATGGGGCAATAACTGTGCAACAATGGATCAGATTTTCACTTCTTGTGGCTTTTCGTCGATTCCGCCAATGAGTACTTGCCCTTCAATGGAGGGATCGACTTTCCCAGAAGGGGTGAGCCATGAAGCATTCCCACTGAATGAAATTGATGGAACTTCCATTTCAGTGGCGAATTCTTTCACTTGTGGAGACAAGGTGATGTTTCAGCAGCCAGACACCGAATTTGGGGTTTCTGAGGTTTCGGACAACACAAATGAAGCAGGTTCGAAATCAAATGATGTCCTTCTAGATAATTGTTTGATTTCTAGGCCGATTGGTTGGTCACTTGATGAGAGAATGCTGAGGGCATTGTCTTTGTTTAAAGAGTCTTCCCCCGGGGGCATTTTGGCTCAAGTCTGGGTGCCTGTAAAGCATGGAAACCAATTCTTCCTGAGCACCAGCGATCAGCCCTATTTGCTAGATCAAATGCTCACGGGGTACCGTGAAGTGTCGAGGTCGTATACCTTCTCTGCAGAAGGAAAATTGGGTTCTCTCCTTGGCCTTCCTGGTCGTGTTTTCACCTCCAAGATTCCAGAATGGACATCAAATGTTAGATATTACAGTGAGAACGAGTATCTGAGAATGGAACATGCAATCGGTCATGAGGTTTATGGATCGATTGCCTTGCCAGTATTCAATAATGAACTTGAAAAGTCATGCTGTGCCGTACTTGAAGTTGTTACTACAAAGGAGAAGTCTGATTTTGATGCAGAGATTGACATTGTTTCCCGAGCACTAGAGATTGTCAGTTTGAGGACTGTTGCACCTCCTCGATTATATCCTCAGTGCTTGAAGCAGAACCAGAGATCTGCCTTAGCAGAGATAATGGATGTTCTACGTGCTGTATGTCATGCACATAGACTACCTCTGGCGCTAACCTGGATTCCTTGCTGTATTACTTTGGAGGCTGTTGACGATGCTGCTAGAGTTCGTGTAAAGGAGAACATTGTTAGCCCAAAGGAGAAATCTGTATTATGCATTGAGGAAACAGCTTGTTATGTGAATGACAAAGCAACTCAAGGTTTTGTGCATGCGTGTATGGAACATCATCTTGAAGAAGGGCAAGGGATCGCTGGGAAAGCTCTTCAATCTAATCATCCTTTCTTTTATCCTGATGTGAAGACATATGATATTAATAAGTATCCACTAGTGCATCATGCACGCAAGTTCGGTTTGAATGCTGCCGTAGCAATCAGGCTGAGAAGCACATATACTGGCGACGATGATTACATATTAGAATTCTTTCTACCTGTCAATATGAAAGGAAGCTCAGAACAGCAACTTTTATTGAACAATCTCTCTGGTACCATGCAAAGAATGTGCCGGAGCTTGAGGACAGTTTCAAAGGAAGAATTAATGGGAGCCAAGGATCCTGATACTGGATTTCAGAGTGGACTGATTGGGAAGTCTGCAACTACATCTAGGAGAAACTCACAATCCACGGTGACAGACAGTGAAACAAGGGCATCTAATTCAGTAAATGATGGAACTGAAGCAGAATGTCCTAAGAAGCAGATGACCAATGGATTGCGGAGGCAGGGGGAGAAAAAACGTAGCACAGCTGAAAAAAATGTGAGCTTGAGTGTTCTTCAGCAATATTTTTCTGGGAGTCTCAAGGATGCAGCAAAGAGCATTGGCGTTTGTCCAACAACTCTGAAAAGAATATGCAGACAACATGGGATTTTGAGGTGGCCATCTCGTAAAATAAACAAGGTGAATCGTTCGCTACGGAAAATACAGACAGTTCTTGATTCTGTTAAAGGGGTGGAGGGCGGTCTGAAGTTCGATCCAACTACAGGGGGTCTTATGGCAGCAGGCTCTCTTATTCCAGAACTCAATGGACAGAATAATCTTCTCTTCTCTGATAACAACCCATCTATAAGAAATCTGGAGCCGTTCCTTCAGGACGGAAACTCAGTTCCTCCCCTCTCTTTCAATGGCCAGAATTCTGCCATGAAACTGGAAACAGAAGACTCCTTCGTCACGATATCCCAAAGAATCTCATCGAGGAATATTCTTATTGCGGAAAAGGAACCGAATGTTTGCCAGCTTGATTGTAGTGAAGGCTTGAAGTCCACAGGGTTAGATGCTGCATCATGCCAGCTTGCTGACCTGGATATGATGGGATGGGAAGTCCCAGGCAATGCTGCAGGCTCTATTATTGCTAAAAAAGGCACTAGATCGGATTTTGTGGAGAATGATTTGAGATCAAGTGAGGCTGACTGCCAATTTATGGCCAAGAGTTCATGCTCTTTTGCAGCTGCTGATGAAACGGGAACTGTGTTGGAAGGCACTGATGGAATCAATGAACATTACCAGCCTACTACTTCTAGCATGACGGACTCATCAAATGGCTCTGGCTTATTGATCCATGGGAGTTCATCCAGCTGTCAGAGCGTCGAGGAGAGGAAGCATTTGCAAGAGAAAATAAGTTGCGTTGACAGTGATTCCAAGATTATTGTAAAAGCTTCATACAAAGATGACACTGTTCGATTCAAGTTTGATCCTTCTTTAGGATATCTCCAGCTCTACGAAGAAGTTGGCAAGAGGTTCAAGTTAAACCAGGGGACATTCCAGCTCAAATACCTTGACGATGAAAAAGAATGGGTAATGCTAGTAAGTAATTCAGATTTGCAGGAATGTCTTGAGGTGATGGATGAGATCGGCACCAGAAATGTGAAGTTTCTCGTCCGCGATATAACGTCTGCCGTGGGCAGTTCTGGCAGCAGTAGCTGCTTCCTATCCAGAGGTTCATGA 2958 44.22 MENPFSSKEEGMVSWGPSRTQAETLTSTDVGMRILSPEDVLHSFSELMSFDSYAGWGNNCATMDQIFTSCGFSSIPPMSTCPSMEGSTFPEGVSHEAFPLNEIDGTSISVANSFTCGDKVMFQQPDTEFGVSEVSDNTNEAGSKSNDVLLDNCLISRPIGWSLDERMLRALSLFKESSPGGILAQVWVPVKHGNQFFLSTSDQPYLLDQMLTGYREVSRSYTFSAEGKLGSLLGLPGRVFTSKIPEWTSNVRYYSENEYLRMEHAIGHEVYGSIALPVFNNELEKSCCAVLEVVTTKEKSDFDAEIDIVSRALEIVSLRTVAPPRLYPQCLKQNQRSALAEIMDVLRAVCHAHRLPLALTWIPCCITLEAVDDAARVRVKENIVSPKEKSVLCIEETACYVNDKATQGFVHACMEHHLEEGQGIAGKALQSNHPFFYPDVKTYDINKYPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVNMKGSSEQQLLLNNLSGTMQRMCRSLRTVSKEELMGAKDPDTGFQSGLIGKSATTSRRNSQSTVTDSETRASNSVNDGTEAECPKKQMTNGLRRQGEKKRSTAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLRKIQTVLDSVKGVEGGLKFDPTTGGLMAAGSLIPELNGQNNLLFSDNNPSIRNLEPFLQDGNSVPPLSFNGQNSAMKLETEDSFVTISQRISSRNILIAEKEPNVCQLDCSEGLKSTGLDAASCQLADLDMMGWEVPGNAAGSIIAKKGTRSDFVENDLRSSEADCQFMAKSSCSFAAADETGTVLEGTDGINEHYQPTTSSMTDSSNGSGLLIHGSSSSCQSVEERKHLQEKISCVDSDSKIIVKASYKDDTVRFKFDPSLGYLQLYEEVGKRFKLNQGTFQLKYLDDEKEWVMLVSNSDLQECLEVMDEIGTRNVKFLVRDITSAVGSSGSSSCFLSRGS 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2138112 2146192 + PI0000424.1 Cmetu07g0313 360794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0313 985 Pfam RWP-RK domain 591 639 IPR003035 -
Cmetu07g0313 985 ProSiteProfiles RWP-RK domain profile. 573 659 IPR003035 -
Cmetu07g0313 985 ProSiteProfiles PB1 domain profile. 885 967 IPR000270 GO:0005515
Cmetu07g0313 985 MobiDBLite consensus disorder prediction 1 22 - -
Cmetu07g0313 985 Pfam PB1 domain 888 965 IPR000270 GO:0005515
Cmetu07g0313 985 SUPERFAMILY CAD & PB1 domains 879 970 - -
Cmetu07g0313 985 MobiDBLite consensus disorder prediction 520 589 - -
Cmetu07g0313 985 PANTHER PROTEIN NLP8 114 978 IPR045012 GO:0003700
Cmetu07g0313 985 MobiDBLite consensus disorder prediction 532 565 - -
Cmetu07g0313 985 SMART PB1_new 885 967 IPR000270 GO:0005515
Cmetu07g0313 985 Gene3D - 881 965 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0313 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0313 Cmetu-Chr7:2138112 Cmetu07g0996 Cmetu-Chr7:5613901 4.00E-120 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8194 PF00564 PB1 3.40E-17 CL0072 Cmetu TF