Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0401 ATGATAGAAGATCAGAAATCCCATATAGCCGATACTAAAAACGTGGACAGTAACGAGAAGAGCTTGTCTCTCAGTCCTATCTCATCCCACTCTGAGAGGAAAGGTTCAAAGCTCAAAAAGAATTTTGACAGTCTTAAAGGTTCAAAGACCAGAAAGAAGAAATTGAATGAATGTCAAATTGAAGATGATGATCTATTAGTTTCGGCCATTATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATTTTCCCATGTAAGAAAATACTTAAAATCTAGAGCGAAAATGAACCGCAAAAGTCAAAAGAGTAGTTGTAAGTTACTCTTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCCTAGGGGCTAGAACAGTGTTGTCATGGTTGCTTGATGCTGGGGTTATATCCTTAAATGATATAATCCAATACCAAAGCCCCAAGGATGGTAGTGTAGTTAAATATGGTAGAATCACTGGAGATGGCATCATATGCAATTGCTGCAGTGACCTACTCTCAATATCTGAATTTAAAAGTCACGCAGGTTTCAAATTTAATCGTCCTTGTTTGAATCTTTTCTTGGACTCTGGGAGGCCTGTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAATATAAGACAAGGAAAAGTAGGACCAGAACAGTGGAAGTTGATGAAGATGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGTGGAGAACTAATATGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAATTCAGGAACTCCCTGAAGGCAACTGGTATTGCTTAAACTGTACTTGCCGGATATGTGGTGGTTTGGTGAATTATGAAGAGACTTCAAGTTCTTCTGATGCGCTAAAATGTTTTCAGTGCGAGCAAAAGTATCATGGACAATGCCTGAAACAAAAAGACATCGATTCTGGAATAGAATCTCATATTTGGTTTTGCAGCGGGAGTTGTCAGAAGATTTACGCAGCTCTTCAATCACGACTTGGATTGATTAATCAGTTTGCAAATGGGTTTTCATGGATGCTTCTTAGATGCATTCATAACGACCAGAAAATTCTGTCTACCCCACGGTTAGCTATGATGGCAGAATGCAATTCCAGATTAGTAGTGGCTCTTACCATTATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATCTGGTATACAGCTGGAAGTCTAGTTTTCCTCGTCTGGACTTTCATGGATTCTACACTGTGATACTTGAGAAAGATGATGTGCTGCTGTGTGTAGCTTCTATCAGGGTACATGGATCAGAACTGGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGACGCCAGGGAATGTGTAGGCGTCTACTGAATGCAATAGAGGAGATGCTGATGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACCGACGGTTTTGGCTTTGTACCTGTGGAAAATGAGGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCCGGAACAGTACTCCTAAAAAAGGCCCTGTATGTACGTGGCCAAACTACAGAGACAACAGTAGGAGTACAACTTGACACCGATACGAAACAGCAATGCGATTCCAATGAACCATGTCCTAGAATGGAAATGAAATGTTCAAAATATGAAGAATTACAAGAACACAATGTTGAAAAGACGAAGAAGGACGATCACGAAGCAAATCCAGCTCCTCCAATTGATTCATCTACATTGCAGTTGGTTGAATCAAATGGATTGGATACTTCTCCAGGACAGAAGTCTGTTAAGCCAAACTGTTGCACTGACATAATTGGTGCCACAACCGAAACCCGCACCCACGAGGCAAAAAAGTCGTTAAAAGTAGAAGTTGGCATAGAATGCGACATTCAGCTTTCGGAAGGAAAGAGCTGGGATGAAGGAGTTCATGGAACCACTATGACTAGATTTGTAGAACCTGTTGTTCTAACTTAG 2049 40.7 MIEDQKSHIADTKNVDSNEKSLSLSPISSHSERKGSKLKKNFDSLKGSKTRKKKLNECQIEDDDLLVSAIIRNKDVSSSAAGFSHVRKYLKSRAKMNRKSQKSSCKLLLRSLGNGEKNYKDGKWYALGARTVLSWLLDAGVISLNDIIQYQSPKDGSVVKYGRITGDGIICNCCSDLLSISEFKSHAGFKFNRPCLNLFLDSGRPVMLCQLQAWSTEYKTRKSRTRTVEVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSIQELPEGNWYCLNCTCRICGGLVNYEETSSSSDALKCFQCEQKYHGQCLKQKDIDSGIESHIWFCSGSCQKIYAALQSRLGLINQFANGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSELAEMPLIATCSKYRRQGMCRRLLNAIEEMLMSFKVKKLVIAAIPSLVETWTDGFGFVPVENEEKQSLHRFNLMVFPGTVLLKKALYVRGQTTETTVGVQLDTDTKQQCDSNEPCPRMEMKCSKYEELQEHNVEKTKKDDHEANPAPPIDSSTLQLVESNGLDTSPGQKSVKPNCCTDIIGATTETRTHEAKKSLKVEVGIECDIQLSEGKSWDEGVHGTTMTRFVEPVVLT 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21629032 21642547 - PI0017308.1 Cmetu07g0401 360882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0401 682 MobiDBLite consensus disorder prediction 1 15 - -
Cmetu07g0401 682 MobiDBLite consensus disorder prediction 1 46 - -
Cmetu07g0401 682 Pfam Tify domain binding domain 162 212 IPR032308 -
Cmetu07g0401 682 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 426 511 IPR016181 -
Cmetu07g0401 682 SMART PHD_3 239 280 IPR001965 -
Cmetu07g0401 682 SMART PHD_3 281 335 IPR001965 -
Cmetu07g0401 682 MobiDBLite consensus disorder prediction 16 31 - -
Cmetu07g0401 682 Gene3D - 411 523 - -
Cmetu07g0401 682 PANTHER PHD FINGER FAMILY PROTEIN 91 601 - -
Cmetu07g0401 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 339 IPR013083 -
Cmetu07g0401 682 Pfam PHD-finger 240 281 IPR019787 -
Cmetu07g0401 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 281 IPR013083 -
Cmetu07g0401 682 FunFam Increased DNA methylation 1 230 282 - -
Cmetu07g0401 682 SUPERFAMILY FYVE/PHD zinc finger 217 281 IPR011011 -
Cmetu07g0401 682 ProSiteProfiles Zinc finger PHD-type profile. 237 282 IPR019787 -
Cmetu07g0401 682 MobiDBLite consensus disorder prediction 582 604 - -
Cmetu07g0401 682 MobiDBLite consensus disorder prediction 32 46 - -
Cmetu07g0401 682 CDD NAT_SF 431 491 - -
Cmetu07g0401 682 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 373 537 IPR000182 GO:0016747
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0401 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0849 Cmetu-Chr1:7734659 Cmetu07g0401 Cmetu-Chr7:21629032 1.70E-110 dispersed
Cmetu07g0401 Cmetu-Chr7:21629032 Cmetu11g2448 Cmetu-Chr11:7300283 5.00E-82 dispersed
Cmetu07g0401 Cmetu-Chr7:21629032 Cmetu11g0706 Cmetu-Chr11:5387624 7.60E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0401 . 48 537 PHD Transcription Factor Family AT3G14980 57.1 1.2e-163 574.7
Cmetu08g1975 . 18 856 PHD Transcription Factor Family AT3G53680 52.8 5.8e-245 844.3
Cmetu10g0397 . 415 544 PHD Transcription Factor Family AT3G53680 54.6 1.2e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8201 PF16135 TDBD 2.40E-16 No_clan Cmetu TR