Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0419 ATGGTGGTGGTGAATACGACGACGGTGGGAAGTGGGTGCCCGGCAGAGATGAAAGCGACGTCGAACGGCGTATTTCAAGGCGATAATCCACTTGATTTCGCTCTTCCTCTGGCCATTTTTCAGATATGTTTGGTTGTTCTTCTTACTCGTCTTCTTGGTTTTCTTCTCCGCCCACTCAGAGAGCCTCGAGTCATCGCCGAGATTGTCGGTGGAATCTTGCTTGGACCATCAGCGGTGGGTCGGAGCCAGGGATTTCTTGAAAGAGTGTTCCCAGAAAAAAGCCTAACAGTGTTGGACACATTAGCCAATATGGGTCTTTTGTTTTTCCTTTTTCTAGTCGGACTTGAGTTAGATCCCAAATCTCTCCGCCGTACCGGAAAAGGCGCAATGGGCATAGCTATGGCCGGAATCACTCTCCCTTTACTCCTCGGCATCGGCACCTCCTACGTCCTCCGTTCCACCATCTCCAAAGGCGTCAACGGTCCTCCCTTTCTCATCTTCATTGCCGTTGCTCTCTCCATCACCGCTTTCCCTGTTCTCGCTCGTATCCTCGCTGAACTCAAGCTTTTAACAACCAACCTCGGCCGTATCGCGATGTCCGCCGCCGCCGTCAATGACGTCGCTGCCTGGATCCTTCTCGCCCTCGCCATTGCCCTTTCCGGTACTCCTCGTTCCCCTCTCGTCTCCCTCTGGGTTTTCCTCTGCTCCTCTGTTTTTGTCCTGTTTTGCTTCTTCACTCTCCCGCCAGCCTTCCGATGGATCTCCCGCCGTTCCTCCAAAGGCGAGCCGGTAAGTGAACTCTACATTTGCGCTACTTTATCCACCGTCTTAGCTGCTGGATTCATCACTGATTTAATCGGAATCCATGCTCTGTTTGGCGCTTTTGTCGTCGGCGTTCTCGTTCCAAAAGAAGGTCCACTCGCCGGAGCTCTCGTCGAAAAAGTCGAAGATCTTGTTTCGAGTCTTTTCCTCCCTCTCTATTTCGTTTCAAGCGGATTGAAAACCAACATTACAACAATTCAAGGAATACAGTCATGGGGTTTGCTCATCCTTGTAATTTTCACTGCATGTTTCGGTAAAATCATCGGAACGATCTTGATGGCACTCTTTTGCAAGATGCCATTACAAGAATCAATTGCCTTAGGATTCTTAATGAACACAAAAGGGTTAGTGGAATTAATCGTTTTAAACATCGGCAAAGACAGAAAAGTTTTGAATGACCAAACCTTTGCAATTCTTGTTCTCATGGCTGTCATCACAACCTTCTTCACAACCCCAATTGTAATGGCGGTTTATAAACCAGCAAAAAGAAAGAGCAAATCAGAATACATAAACAGAACAATCGAACGAGAAGAACCCAATTCGGAGCTGAGGATTTTGGCTTGTTTTCACTCTGTTAATAACATTCCTTCCATTTTGAATTTGATTGAGGTGAGTCGTGGGATGGAGGGGAAAGAAGGTTGTGGAAGTGAACTTTGTGTTTATGCAATGCATTTGATGGAGCTGACAGAGAGATCGTCCGCAATTGTTATGGTCCATCGAGCTAGAAAAAATGGGAGACCGTTTTGGAATAAAGGAGGGAAGTCGGGTTGTGATGAAATTGGTGTGGCGTTTAAGGCTTTTGAACAGCTTAGTCGAGTGTCTATACGTCCAATGACTGCCATTTCTCGACTTTCGGATATGCACGAAGATGTGTGCAATAGAGCAGAGCGGAAACGCGCCGCCATTATCATTCTTCCTTTCCATAAACACCAAAGATTTGATGGATATTTAGAAGCAACACGAGGTGATTTCCAATCGGTCAATCAAAAAGTTCTACAACAATCACCATGTTCTGTTGGAATCCTAGTTGACAGAGGATTTGGAGGTGGTTCTCACATCTCCTCCACCAACACCTCTTCCACCATAACCATCTTCTTCTTCGGCGGCCACGACGACCGTGAAGCTCTAGCCTTCGGTCGGAGGATGTCACAACATTCTAAAACAACCTTGAACATTGTTCATTTCATTTTCACCTCCAACATGAATGCAGAATCTACTACGGTTGAAATGAACAAAGACGACATTAAAAGTTCCACAGTCATAGACCAAAGGGTGTTGATGGAGTTCAATGGGAAGAAAACAAACGACATGTCGATTAGATATGAAGAGAGGGTAGTGAGCACATTTAGCAATGTTATTGAAGTGATAAGGGAATTTAGTAGATGTAATTTAATATTGGTGGGTCAAAAGCCAGAAGGGGAAGTAGTGAAGAATCTTCTTGAATATTTCAAGATCAATGTGGAATGCCCCGAGTTAGGTCCTATTGGAAACTTATTGATATCAAAAGAGTTATCAATATCAGCTTCAATCTTGGTGCTGCAACAGTTTCGTGAGAATGTATTACCTAAGTAA 2394 45.2 MVVVNTTTVGSGCPAEMKATSNGVFQGDNPLDFALPLAIFQICLVVLLTRLLGFLLRPLREPRVIAEIVGGILLGPSAVGRSQGFLERVFPEKSLTVLDTLANMGLLFFLFLVGLELDPKSLRRTGKGAMGIAMAGITLPLLLGIGTSYVLRSTISKGVNGPPFLIFIAVALSITAFPVLARILAELKLLTTNLGRIAMSAAAVNDVAAWILLALAIALSGTPRSPLVSLWVFLCSSVFVLFCFFTLPPAFRWISRRSSKGEPVSELYICATLSTVLAAGFITDLIGIHALFGAFVVGVLVPKEGPLAGALVEKVEDLVSSLFLPLYFVSSGLKTNITTIQGIQSWGLLILVIFTACFGKIIGTILMALFCKMPLQESIALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAVITTFFTTPIVMAVYKPAKRKSKSEYINRTIEREEPNSELRILACFHSVNNIPSILNLIEVSRGMEGKEGCGSELCVYAMHLMELTERSSAIVMVHRARKNGRPFWNKGGKSGCDEIGVAFKAFEQLSRVSIRPMTAISRLSDMHEDVCNRAERKRAAIIILPFHKHQRFDGYLEATRGDFQSVNQKVLQQSPCSVGILVDRGFGGGSHISSTNTSSTITIFFFGGHDDREALAFGRRMSQHSKTTLNIVHFIFTSNMNAESTTVEMNKDDIKSSTVIDQRVLMEFNGKKTNDMSIRYEERVVSTFSNVIEVIREFSRCNLILVGQKPEGEVVKNLLEYFKINVECPELGPIGNLLISKELSISASILVLQQFRENVLPK 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5097220 5103945 - PI0012969.1 Cmetu07g0419 360900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0419 797 PANTHER CATION/H + ANTIPORTER 12 791 - -
Cmetu07g0419 797 FunFam Cation/H(+) antiporter 15 37 439 - -
Cmetu07g0419 797 Pfam Sodium/hydrogen exchanger family 42 427 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Cmetu07g0419 797 Gene3D - 37 442 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0419 K26731 - - csv:101208346 1436.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0419 Cmetu-Chr7:5097220 Cmetu07g1694 Cmetu-Chr7:5055002 1.20E-265 dispersed
Cmetu07g2010 Cmetu-Chr7:5065164 Cmetu07g0419 Cmetu-Chr7:5097220 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g1833 . 11 819 Antiporter Super Family AT2G13620 72.2 0.0e+00 1163.3
Cmetu07g2010 . 11 785 Antiporter Super Family AT2G13620 50.4 8.5e-209 724.2
Cmetu08g1910 . 77 848 Antiporter Super Family AT3G53720 69.0 2.2e-291 998.4
Cmetu07g2010 . 1 785 Antiporter Super Family AT5G41610 66.9 1.6e-297 1018.8
Cmetu07g1694 . 1 759 Antiporter Super Family AT5G41610 66.7 6.7e-291 996.9
Cmetu07g0419 . 7 790 Antiporter Super Family AT5G41610 64.0 2.3e-283 971.8
Cmetu08g1910 . 9 833 Antiporter Super Family AT5G41610 50.5 4.1e-208 721.8
Cmetu07g2010 . 11 783 Antiporter Super Family AT4G23700 66.2 9.8e-290 993.0
Cmetu07g0419 . 8 790 Antiporter Super Family AT4G23700 62.4 3.6e-276 948.0
Cmetu07g1694 . 9 776 Antiporter Super Family AT4G23700 60.7 5.2e-267 917.5
Cmetu07g2010 . 4 783 Antiporter Super Family AT3G17630 62.9 3.1e-272 934.9
Cmetu07g0419 . 6 790 Antiporter Super Family AT3G17630 59.3 4.0e-256 881.3
Cmetu07g1694 . 11 759 Antiporter Super Family AT3G17630 60.7 4.9e-254 874.4
Cmetu08g1910 . 9 819 Antiporter Super Family AT3G17630 52.8 3.5e-207 718.8
Cmetu07g2010 . 4 785 Antiporter Super Family AT1G64170 57.5 3.1e-240 828.6
Cmetu07g0419 . 3 790 Antiporter Super Family AT1G64170 54.7 2.6e-226 782.3
Cmetu07g1694 . 15 764 Antiporter Super Family AT1G64170 54.7 1.2e-218 756.9
Cmetu11g1833 . 11 819 Antiporter Super Family AT2G13620 72.2 0.0e+00 1163.3
Cmetu07g2010 . 11 785 Antiporter Super Family AT2G13620 50.4 8.5e-209 724.2
Cmetu07g2010 . 4 785 Antiporter Super Family AT1G64170 57.5 3.1e-240 828.6
Cmetu07g0419 . 3 790 Antiporter Super Family AT1G64170 54.7 2.6e-226 782.3
Cmetu07g1694 . 15 764 Antiporter Super Family AT1G64170 54.7 1.2e-218 756.9
Cmetu07g2010 . 11 783 Antiporter Super Family AT4G23700 66.2 9.8e-290 993.0
Cmetu07g0419 . 8 790 Antiporter Super Family AT4G23700 62.4 3.6e-276 948.0
Cmetu07g1694 . 9 776 Antiporter Super Family AT4G23700 60.7 5.2e-267 917.5
Cmetu07g2010 . 1 785 Antiporter Super Family AT5G41610 66.9 1.6e-297 1018.8
Cmetu07g1694 . 1 759 Antiporter Super Family AT5G41610 66.7 6.7e-291 996.9
Cmetu07g0419 . 7 790 Antiporter Super Family AT5G41610 64.0 2.3e-283 971.8
Cmetu08g1910 . 9 833 Antiporter Super Family AT5G41610 50.5 4.1e-208 721.8
Cmetu07g2010 . 4 783 Antiporter Super Family AT3G17630 62.9 3.1e-272 934.9
Cmetu07g0419 . 6 790 Antiporter Super Family AT3G17630 59.3 4.0e-256 881.3
Cmetu07g1694 . 11 759 Antiporter Super Family AT3G17630 60.7 4.9e-254 874.4
Cmetu08g1910 . 9 819 Antiporter Super Family AT3G17630 52.8 3.5e-207 718.8
Cmetu08g1910 . 77 848 Antiporter Super Family AT3G53720 69.0 2.2e-291 998.4
Cmetu01g0797 . 10 790 Antiporter Super Family AT3G52080 52.9 8.8e-235 810.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111