Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0535 ATGATGGTGGAGTTCCATGGAGAAATCCCATCCCATAGCGATGAAGACGACCGAGACCAAGAACCAGACGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAGAGATCGACAACGGATGAAGAAGATGAAGGAGAAGCGTGATGAGGAAGAGCCTGAATCTGCTGCAAGAGAAGAAGCTTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCCATTCTTAACTCAAGGGTTGTTTATGGAATCGTCCCGGAAAAAGGAAAACCGGTTACTGGCTCTTCCGAGAGCCTCCGTGAATGGTGGAAAGATGATGTCCGATTCGAACAAGATGCTCCAATGGCCATAGCGAAATTTCTCCCCAAAGTAATTGAAGAATCAGGGATTGATCCCAATTCGTTTTTGCATTTACTCACCGATTTACAGGACACAACATTGGGATCCATTCTCTCTGCTTTGATGCAGCACTGTATTCCTCCACAGAGGAAATTCCCACTGGAAAAGGGTTTAGCGCCGCCATGGTGGCCGACGGGTAACGAGCTTTGGTGGGGTGAACAAGGCTCCGCCGGTGGTCATGGTGCGTGGAAAATCAGTGTCTTGGCGGCGGTGATTAAACACATGTCACCTGATTTAGACAACATGAGGAAATTAGTTCGGCAATCGAAGAACTTACAAGCGAAAATGACAGCGAAAGAGACACTCACTTGGTCTAAAGTTGTGAATCAAGAAGAAGCTCTGATGGACTTAACAAAAAAGAGCTTAAGAATCACCTCCGACGACGAAGAAGAAGAAGAAGAACACAACAAAAACAAAGACGAACAGAGCAGCCATGGAATTATGACGAAACGAAAGTGTATATTCGAACAAGATCCCTTATCGGATTCGTTGTTATACCCTTGCCAGAATCAATGGTGTCCACAGAGTGAAGTGCTAATGGGATTTATAGACAAGAACACAAGAACAGAGCATGAGACACAGTGCATTTACAGAGGAGAGAGGGCAGAGCAATTTTCGGACGAGCAATCGATCGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGCTGGGAAGGGCGGAGCCGGGGAGTGAGGAGGCGAGGATCGAAGATGCCGGAGATGGGTCGGGGAGCAGCACGGTGGAGGATTACGGGAGTGGATACTGGAATATGGATTTGAATGCGAGTCCGGCGGAGGATTTGAGTGGGCAACAACAAGATGCTACTTCTATTTGGGATTTGAGATATGAATGGGGAGCTGAAGAATGA 1275 47.14 MMVEFHGEIPSHSDEDDRDQEPDEEISYDDLKKRMWRDRQRMKKMKEKRDEEEPESAAREEASRRKKMARAQDSILNSRVVYGIVPEKGKPVTGSSESLREWWKDDVRFEQDAPMAIAKFLPKVIEESGIDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGSAGGHGAWKISVLAAVIKHMSPDLDNMRKLVRQSKNLQAKMTAKETLTWSKVVNQEEALMDLTKKSLRITSDDEEEEEEHNKNKDEQSSHGIMTKRKCIFEQDPLSDSLLYPCQNQWCPQSEVLMGFIDKNTRTEHETQCIYRGERAEQFSDEQSIDTHLKSVVEWMNWELGRAEPGSEEARIEDAGDGSGSSTVEDYGSGYWNMDLNASPAEDLSGQQQDATSIWDLRYEWGAEE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3772890 3774234 - PI0019940.1 Cmetu07g0535 361016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0535 424 MobiDBLite consensus disorder prediction 363 388 - -
Cmetu07g0535 424 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 11 352 IPR006957 GO:0003700|GO:0005634
Cmetu07g0535 424 Gene3D - 129 254 IPR023278 GO:0003700|GO:0005634
Cmetu07g0535 424 MobiDBLite consensus disorder prediction 1 70 - -
Cmetu07g0535 424 MobiDBLite consensus disorder prediction 257 279 - -
Cmetu07g0535 424 Pfam Ethylene insensitive 3 29 245 IPR047091 GO:0003700
Cmetu07g0535 424 MobiDBLite consensus disorder prediction 43 70 - -
Cmetu07g0535 424 Coils Coil 28 48 - -
Cmetu07g0535 424 SUPERFAMILY DNA-binding domain of EIN3-like 136 248 IPR023278 GO:0003700|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0535 K14514 - - csv:101210698 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0331 Cmetu-Chr3:8062848 Cmetu07g0535 Cmetu-Chr7:3772890 2.10E-66 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1832 . 2 626 EIL Transcription Factor Family AT2G27050 58.9 5.1e-192 667.9
Cmetu03g0331 . 8 507 EIL Transcription Factor Family AT2G27050 62.5 5.5e-170 594.7
Cmetu02g1340 . 44 350 EIL Transcription Factor Family AT2G27050 57.4 9.0e-96 348.2
Cmetu02g1340 . 44 577 EIL Transcription Factor Family AT1G73730 54.5 3.7e-147 518.8
Cmetu02g1832 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.7e-105 378.3
Cmetu03g0331 . 38 335 EIL Transcription Factor Family AT1G73730 61.6 8.5e-104 374.8
Cmetu02g1832 . 3 626 EIL Transcription Factor Family AT3G20770 62.3 2.9e-209 725.3
Cmetu03g0331 . 7 505 EIL Transcription Factor Family AT3G20770 63.6 3.7e-172 602.1
Cmetu02g1340 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.6e-98 357.5
Cmetu02g1340 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 4.7e-70 262.7
Cmetu07g0535 . 23 330 EIL Transcription Factor Family AT5G10120 52.9 2.9e-84 309.7
Cmetu02g1340 . 44 290 EIL Transcription Factor Family AT5G10120 55.2 6.6e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8207 PF04873 EIN3 3.90E-78 No_clan Cmetu TF