Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0573 ATGGAATGTGTTCGATTAAGCCCTCAACTCTGTTTTAATCCTCAGAATGTTGCTTCCTCTGATGATTTTTTCGTCGACCAACTCTTGGATTTGTCTGATCATGATGAATTTCTTCAAGACCAGACCCCTGATGATGATGACGATGATGATAAACCTTCTGTTTCCCTTTCCAATTTTGTTTCTGCTCAGGAAATTCATCAGGACTCCATTGTTTCCGATCTTCCTTCTTTACCTTCCAGCGAACTTACCGTTCCGGCGGATGATTTGGAGGACCTCGAATGGCTATCCCATTTTGTTGAGGATTCTTTCTCTGGATTCTCCGCTCCCTTTCCTTCTCTCATGAAATCGTCTAAGGAAATTGTAACCTTAGAGGAACAACTGGAAGATGATGGTTCTGTTTCGCCCCCGGAGCCCTGTTTCAAGACCCCCATTCCGGTTAAGGCTAGAAGCAAACGGAGGAGAACCAGCGGTCGAGTTTGGTGCCTTCGTTCACCGTCGTTGACCGAATCGTCCTCTTGTTCCACAACGTCGTCCTCCTCGTCATCGCCGGCGAGTCCTTGGCTCATCATTTCCGACCGTTTCGAACCGGATATTCCAGTCACGAAGAAACGAAGGAGAAAATCGCCATCGCAAAAATCCAGAATCACCATTGGAGCACAGCCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACTCCTCAATGGAGAACCGGCCCGCTCGGAGCAAAAACCCTGTGCAACGCTTGTGGCGTTCGGTTTAAATCGGGTCGACTTTTACCCGAATATCGACCAGCATGCAGTCCGACTTTCTCCAGCGAATTGCACTCTAACCACCACCGGAAAGTCCTCGAAATGCGCCGGAAAAAGGAAGTGACGGCCCCGGCCGAGTTTTTGACCGTAGAAAAAAATTAA 915 48.96 MECVRLSPQLCFNPQNVASSDDFFVDQLLDLSDHDEFLQDQTPDDDDDDDKPSVSLSNFVSAQEIHQDSIVSDLPSLPSSELTVPADDLEDLEWLSHFVEDSFSGFSAPFPSLMKSSKEIVTLEEQLEDDGSVSPPEPCFKTPIPVKARSKRRRTSGRVWCLRSPSLTESSSCSTTSSSSSSPASPWLIISDRFEPDIPVTKKRRRKSPSQKSRITIGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVTAPAEFLTVEKN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4305823 4307177 - PI0004884.1 Cmetu07g0573 361054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0573 304 CDD ZnF_GATA 224 272 IPR000679 GO:0006355|GO:0043565
Cmetu07g0573 304 PIRSF Txn_fac_GATA_plant 1 303 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmetu07g0573 304 FunFam GATA transcription factor 215 300 - -
Cmetu07g0573 304 Pfam GATA zinc finger 225 259 IPR000679 GO:0006355|GO:0043565
Cmetu07g0573 304 MobiDBLite consensus disorder prediction 198 226 - -
Cmetu07g0573 304 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Cmetu07g0573 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 281 - -
Cmetu07g0573 304 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Cmetu07g0573 304 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
Cmetu07g0573 304 PANTHER GATA TRANSCRIPTION FACTOR 16 294 - -
Cmetu07g0573 304 MobiDBLite consensus disorder prediction 128 151 - -
Cmetu07g0573 304 Gene3D - 218 293 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0573 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3117 Cmetu-Chr4:13266872 Cmetu07g0573 Cmetu-Chr7:4305823 2.40E-34 dispersed
Cmetu05g1286 Cmetu-Chr5:17418118 Cmetu07g0573 Cmetu-Chr7:4305823 1.00E-30 dispersed
Cmetu07g0573 Cmetu-Chr7:4305823 Cmetu11g0280 Cmetu-Chr11:27929035 2.10E-48 dispersed
Cmetu04g1399 Cmetu-Chr4:3899744 Cmetu07g0573 Cmetu-Chr7:4305823 1.10E-43 wgd
Cmetu07g0573 Cmetu-Chr7:4305823 Cmetu08g1090 Cmetu-Chr8:21657393 3.10E-07 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0192 . 108 359 C2C2-Gata Transcription Factor Family AT5G25830 58.5 1.8e-69 260.0
Cmetu07g0573 . 15 297 C2C2-Gata Transcription Factor Family AT5G66320 52.2 8.1e-65 244.6
Cmetu04g1399 . 104 267 C2C2-Gata Transcription Factor Family AT4G36240 54.2 1.5e-41 166.8
Cmetu03g0192 . 110 359 C2C2-Gata Transcription Factor Family AT4G32890 50.5 2.3e-58 223.0
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.7 1.9e-137 486.5
Cmetu04g3254 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.9 1.9e-134 476.5
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.5 1.4e-118 423.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8209 PF00320 GATA 3.80E-16 CL0167 Cmetu TF