Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0594 ATGGGTACAAGAACACAGCAACCATCCCGAGAAGACGACGATGACGACCTCCCAAGTGGCCCTGGTGCCACCACGATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTGGGTTCTCCTTCTAGTCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCCACTGCTAATGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACATATAACGAGGTTGCAGATGAACTTGTCACAGAGTTTGCTGATCCTGGCAACAGTGTTGCATCGCCAGATCAGCAGCAACAGTACGACGAAAAAAATATCAGGCGGAGGGTATATGATGCCCTGAATGTCCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAGGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGTTGGAGGAACAGTATGTAGGTCTGCAGAACCTAATACAGCGAAATGAGCAGTTATTCAGTTCGGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACGCGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTATGTTTTGAAGGCGATGAAATTTTGCGACAGACCACAATGCGATAATACAGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCATATCCCTATTCCTTCATTGTCTAACACGCCGGTTAGAACACCAACCTCACCACCACTTCCTGGAATCATAAAAGCTCGCGTCAAACATGAACATTAA 1047 47.76 MGTRTQQPSREDDDDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVTEFADPGNSVASPDQQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQPPHIPIPSLSNTPVRTPTSPPLPGIIKARVKHEH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11303205 11307578 + PI0014751.1 Cmetu07g0594 361075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0594 348 SUPERFAMILY Winged helix DNA-binding domain 95 177 IPR036390 -
Cmetu07g0594 348 PANTHER TRANSCRIPTION FACTOR DP 24 298 IPR015648 GO:0005667|GO:0051726
Cmetu07g0594 348 SMART E2F_TDP_2 92 176 IPR003316 GO:0005667|GO:0006355
Cmetu07g0594 348 Gene3D - 88 181 IPR036388 -
Cmetu07g0594 348 SUPERFAMILY E2F-DP heterodimerization region 183 295 IPR037241 -
Cmetu07g0594 348 FunFam Transcription factor-like protein DPB 182 307 - -
Cmetu07g0594 348 Pfam Transcription factor DP 184 291 IPR014889 -
Cmetu07g0594 348 PIRSF Txn_factor_DP 3 348 IPR015648 GO:0005667|GO:0051726
Cmetu07g0594 348 CDD DP_DD 181 284 IPR014889 -
Cmetu07g0594 348 MobiDBLite consensus disorder prediction 1 95 - -
Cmetu07g0594 348 FunFam Transcription factor-like protein DPB 87 181 - -
Cmetu07g0594 348 MobiDBLite consensus disorder prediction 22 60 - -
Cmetu07g0594 348 Pfam E2F/DP family winged-helix DNA-binding domain 95 176 IPR003316 GO:0005667|GO:0006355
Cmetu07g0594 348 Gene3D Transcription factor DP 182 304 IPR038168 -
Cmetu07g0594 348 SMART DP_2 183 346 IPR014889 -
Cmetu07g0594 348 Coils Coil 192 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0594 K04683 - - csv:101216863 671.389
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8212 PF08781 DP 4.00E-41 No_clan Cmetu TF