Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0647 ATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAAGCAGCTGTAAATGCTGGAATAATCCACCACCCAACTACACCTTCTTGGACTCCCTCCTCATCCTCCCGCAACAGGATGCCCATTATCGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGAAGAGTGTTATGAAAATGGGATGGACTCATTCGTATCAAAGCCAATCACCTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCACCTTTGTAA 294 44.9 MPVMDGLEATRLIRSFEETGSWEAAVNAGIIHHPTTPSWTPSSSSRNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLPQPPL 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23764582 23767035 + PI0015359.1 Cmetu07g0647 361128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0647 97 CDD REC_hyHK_CKI1_RcsC-like 1 88 - -
Cmetu07g0647 97 Pfam Response regulator receiver domain 47 88 IPR001789 GO:0000160
Cmetu07g0647 97 ProSiteProfiles Response regulatory domain profile. 1 92 IPR001789 GO:0000160
Cmetu07g0647 97 SUPERFAMILY CheY-like 1 93 IPR011006 -
Cmetu07g0647 97 PANTHER HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J 1 93 - -
Cmetu07g0647 97 Gene3D - 1 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0647 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0647 Cmetu-Chr7:23764582 Cmetu11g0071 Cmetu-Chr11:1853706 3.80E-07 dispersed
Cmetu07g0647 Cmetu-Chr7:23764582 Cmetu10g1485 Cmetu-Chr10:10089500 4.90E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8216 PF00072 Response_reg 1.50E-07 CL0304 Cmetu TR