Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0650 ATGGACGAAGAACTGATTGCGAATTTTGTGTCAGCATACTTGAAGAAGAAGGGTTTCAAGGAAACGGAACAAGCTTTTCAGGAAGAGCTACGTCAGAACAAGACTAATTCTTCTTCTCCGTCTTCTTTCATTGACATCGACGTCTCTAAGCACTTACTCTCCTTCTCCGAAGCAGAGAATATTCCAGCTAGATACCTTGAAGGATATAGCAAGCTTAGGTCCTGGGCTTATAACTCACTAGATTTGTACAAGCATGAGTTGCTTCGTGTGCTATACCCTGTGTTTATTCATTGTTTCATGGATCTTGTGGCTAAAGGACATATTCAAGAAGCTCGAACCTTTTTCAATAGGTTCCGTGAAGACCATGAAATGATGCACCTACGCGACCTACAAAAGTTGGAAGGTGTACTATCTCCCTCTCATTTGGAGGAGATGGAATTTGCTCATTCTCTTAGGCAGGGCAAAGTCAACATAAAAATATGCCAGTACTCCTATGAGATGCTACTGCAATATCTTCATAAGACCCAAACCACAGTGATACTCGGGATTATCAATGAACGCATCAACTTCCAAGTTTTCCCTGGTCAGCCTAGCTCAATATCTGATGATGCGGAACTTGTGACACTCACGGGAAGCACCCAGGACACTGCTAATCAGATAAATAAAAAGAAGTTCATTGGGGGGTGCTTACTCGAAGATTCTTTAGAAGAACGCCTGGAGAAAGCTGCTGGTTTGCTTTCAGATTCTGAAAAAGCTGAGGGAGAAACCAAGGATGGTGATGTAGATGAGAATAAGAAAAGAACAGCTGAGGGAGGAAAGCAAGGTGGTTCAATTAAAAAAGTCAAGAAGGACAAGACTGCCAGTGCAACTGGAAAAACTCTGAGGGCTGAAACTAATTCAGCATCTATGGCACCACGAGTGAAGCCAGAGCTTGCTTTACCCATAATATCAACAGAGGTGGAACAATCTATTCTTGAAGACTTGAGGAACCGTGTGCAGTTGAGTTCTGTAGCTCTGCCATCAGTCAGCTTTTATACCTTCATTAATACACACAACGGTTTAAACTGTTCATCAATATCATATGATGGAGCTTTAGTTGCGGGTGGATTCTCAGACTCGTCTTTGAAGGTTTGGGACATGGCAAAGCTAGGACAACAAGCTGGCAATACTGTTTTGCAGGATGAAAACGATATATCTACTAGTGATCCAGTGACAGGGCATACGAGTGGGAAGAGGCCGTATACATTATTTCAAGGTCATTCTGGGCCTGTTCACTCTGCCACTTTCAGTCCCATTGGGGACTTCGTTCTTTCATCCTCTGCAGACACAACTAGTAGGACCAAACTGGCCCTTCCTTCGATTGTGGAGCACAAACTAAATGCCAATCTTGTTTGCTACAAAGGTCACAATTACCCAGTATGGGATGTTCAGTTTAGTCCGGTTGGACATTATTTTGCTAGTTGCTCACATGATCGAACTGCAAGGATCTGGTCTATGGATAGAATTCAACCTTTAAGGATCATGGCAGGACATCTATCTGATGTGGATTGTGTTCAATGGCATGCCAACTGCAACTACATTGCAACTGGCTCGAGTGACAAAACTGTTAGATTGAGCATGATTCTGTCGTTGGCAATGTCACCTGACGGTCGGTTCATGGCATCTGGTGATGAAGACGGTACGATTATGATGTGGGACCTATCAACAGGTCGCTGGTCTCTCCTCGCCTCCGGTTCTGCCGACTGCACAGTGAAATTATGGGACGTAACTTCAAGCACCAAGCCACCAAGAACAGATGAAAACAAAACTGGAACTGCCAATAGACTTAGATCCTTGAAGACTCTACCAACCAAGTCAACTTCGGTTTACAGTTTGCGGTTCTCTCGGAGGAATCTCTTATTTGCAGCTGGGGCTCTCTCAAAAGTGCATCTGCTTAACACTCTAATCTTTTGTAATCCTTGCTTAATACAATTGTCCTGA 1980 43.59 MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDIDVSKHLLSFSEAENIPARYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQGKVNIKICQYSYEMLLQYLHKTQTTVILGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKKFIGGCLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENKKRTAEGGKQGGSIKKVKKDKTASATGKTLRAETNSASMAPRVKPELALPIISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDISTSDPVTGHTSGKRPYTLFQGHSGPVHSATFSPIGDFVLSSSADTTSRTKLALPSIVEHKLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRWSLLASGSADCTVKLWDVTSSTKPPRTDENKTGTANRLRSLKTLPTKSTSVYSLRFSRRNLLFAAGALSKVHLLNTLIFCNPCLIQLS 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24007906 24015262 + PI0004728.1 Cmetu07g0650 361131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0650 659 Gene3D - 539 648 IPR015943 GO:0005515
Cmetu07g0650 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 446 IPR001680 GO:0005515
Cmetu07g0650 659 MobiDBLite consensus disorder prediction 245 290 - -
Cmetu07g0650 659 Coils Coil 656 659 - -
Cmetu07g0650 659 ProSitePatterns Trp-Asp (WD) repeats signature. 553 567 IPR019775 -
Cmetu07g0650 659 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Cmetu07g0650 659 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 466 500 - -
Cmetu07g0650 659 SMART Lish 2 34 IPR006594 GO:0005515
Cmetu07g0650 659 Pfam WD domain, G-beta repeat 503 538 IPR001680 GO:0005515
Cmetu07g0650 659 Pfam WD domain, G-beta repeat 541 566 IPR001680 GO:0005515
Cmetu07g0650 659 Pfam WD domain, G-beta repeat 463 498 IPR001680 GO:0005515
Cmetu07g0650 659 Pfam WD domain, G-beta repeat 349 379 IPR001680 GO:0005515
Cmetu07g0650 659 Pfam WD domain, G-beta repeat 572 588 IPR001680 GO:0005515
Cmetu07g0650 659 Pfam WD domain, G-beta repeat 417 444 IPR001680 GO:0005515
Cmetu07g0650 659 Gene3D TFIID subunit TAF5, NTD2 domain 45 193 IPR037264 -
Cmetu07g0650 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 538 IPR001680 GO:0005515
Cmetu07g0650 659 Gene3D - 327 451 IPR015943 GO:0005515
Cmetu07g0650 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 573 597 IPR001680 GO:0005515
Cmetu07g0650 659 SUPERFAMILY Taf5 N-terminal domain-like 51 193 IPR037264 -
Cmetu07g0650 659 PRINTS G protein beta WD-40 repeat signature 485 499 IPR020472 -
Cmetu07g0650 659 PRINTS G protein beta WD-40 repeat signature 553 567 IPR020472 -
Cmetu07g0650 659 PRINTS G protein beta WD-40 repeat signature 575 589 IPR020472 -
Cmetu07g0650 659 SMART WD40_4 501 540 IPR001680 GO:0005515
Cmetu07g0650 659 SMART WD40_4 410 445 IPR001680 GO:0005515
Cmetu07g0650 659 SMART WD40_4 608 646 IPR001680 GO:0005515
Cmetu07g0650 659 SMART WD40_4 340 379 IPR001680 GO:0005515
Cmetu07g0650 659 SMART WD40_4 459 498 IPR001680 GO:0005515
Cmetu07g0650 659 SMART WD40_4 555 588 IPR001680 GO:0005515
Cmetu07g0650 659 SUPERFAMILY WD40 repeat-like 340 639 IPR036322 GO:0005515
Cmetu07g0650 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 571 IPR001680 GO:0005515
Cmetu07g0650 659 CDD TAF5_NTD2 62 194 IPR007582 -
Cmetu07g0650 659 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 638 - -
Cmetu07g0650 659 MobiDBLite consensus disorder prediction 245 303 - -
Cmetu07g0650 659 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 507 IPR001680 GO:0005515
Cmetu07g0650 659 CDD WD40 348 641 - -
Cmetu07g0650 659 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 188 IPR007582 -
Cmetu07g0650 659 Gene3D - 452 538 IPR015943 GO:0005515
Cmetu07g0650 659 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 571 - -
Cmetu07g0650 659 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0650 K03130 - - csv:101214018 1191.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g509 . . Bda01g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g0871 . . . . . . . . Bhi09g03000 Tan01g3572 Cmetu07g0650 . Hepe01g1970 Mch11g0508 . . . . . . . . . . . Cme07g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010521 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32