Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0660 ATGGACGACCTCGGTGCCCAAGTCGTTCCTCCTATTTTCATCCACCAATCCTTGACAAGTCGCTACACTGATCTCCCTTCCATCCCCAAGAAGCGTCCCTTATCCTATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCTCTAAATTTCTCACCAAACCCTCTAACCTGAACAACACCACTCTCGATGACCACGATGACACTCTTCGCCTTAATCTTGGTGGTCGTTACGTTGAGGACCCCGTCTCCAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGCCTCTGTCACCTACCCTATGTGCCAAGTCGATAATTGTAAGGAAGATCTCTCCAATGCCAAAGACTATCACCGCAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAGCAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCACCCTCTTTCCGAATTTGACGATGGGAAGAGGAGTTGTAGGAGGAGGCTTGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGCACTGGGAATCTTGACATCGTCGGTCTATTAACTGTTCTAGCTAGGGCTCAAGGCAAAAATGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCCGACCTTGCCGCGAAGTTGCCCAATTTAGAGAATTTTAAGGGGAAGGCTCCTCCACAAAGTTCTCTGCAGCACCAAAACAAATTAAATGGTAATCCGTCTTCTCCTTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCGCATCAGCTCCGGATGCTCTTGCAATGCTGTCACAGAAGAGCACTGTCAGTAGTGATAGTGAAAAAACAAGGTCATCCTGCCCATCTGGTTCTGATCTTCAGAATAGGCCTCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCCGATGGGCAGGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGCTCTTTGGCTCTTCACCTGAACATGATGCCCCACCGAACTTGACGGCTTCTAGAAAGTACTTCTCTTCGGATAGCAGCAATCCTATTGAAGAGAGGTCTCCGTCATCTTCACCTCCTCTCCTGCAAACGTTGTTCCCCGTGCAAAGCATAGAAGAAACTAACAGTAATGGGAAAATGCCAATCAGAAAAGAAATTAATGGTGTTGAGGGTCGAAAACCTCCTAGTAGCAATATTCCCTTTGAACTCTTCCGAGAATTGGATGGAGCAAGACCAAATTCGTTTCAAACTATTCCTTACCAAGCTGGATACACTTCTTCCGGGTCTGATCATTCCCCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGACGGATAAGTTTTAAGCTTTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCTTCTGAGATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCGGTTTATATGTCCATGTCCTCCATTGCGTGGGAACAGCTTGAAGAAAATTTGGTTCTGCATCTTAAATCTTTGGTTCATAGCGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTCTAGTTTACACTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCATCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAACCTCGGTGTCACCTTTGGCAGTTGTGAGTGGACAAAAGACCTCGTTTTTATTAAGGGGAAGGAATTTGAAAAATCCTGGCACCAGGATTCATTGCACATCTATGGGAGGCTACATATCCGAAGAAGTAATGGGATTAAGTAGTCAGGGAAGATACGATGAGATACATTCTAGAAGTTTCAAAGTTGGAGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAATAGTTTCCCTGTTATCATAGCTGATGCTACCATCTGTAGGGAATTGAGGCATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCTGATATCAGTTCAGAAAGTCATTCATCTGTTTCTTCGCAGCCAAGGCTAAGGGAAGATATTTTGCAGTTCTTGAATGAACTTGGATGGCTGTTCCAAAGGGAAAGGTCCTCTTATGAGCTAGATAATCCAGATTTTTTAATAAGGCGGTTCAGATTTTTACTCACGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTGAAAACACTTCTTGACATTTTAGCCAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCGTTGGAGATGATATCTGAGATTCAGCTCTTAAACCGGTCAGTGAAAAGGAGGTGCAGGCGGATGGTTGACTTACTTAAAAAATACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACTCCTCTGCATTTGGCAGCATCAATGGCAGATGCAGATGATTTGGTTGATGCTCTAACAAATGACCCGCTAGAGATTGGTTTGGAATGCTGGAGTTCACAACTTGATGAAAGCGGACGGTCGCCGCAGGCTTATGCTTTAATGAGGGGTAATCATACTTGTAATGAGCTGGTGAAGCGAAAACTAGGTGACAGAAAGAATGGTCAAGTTTCAGTTAGAATTGGGAATGAGATAGAGCAATTAGAGGTGTCAAGTGGTGAGCGGGGAAGGGTGAAAGGTAGGTCCTGCTCCAGGTGTGCTGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTCGGAGTGGGACACACAGGTTGCTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCTGTTTGCGTTTGCGTGTGCCTATTTTTGCGAGGTTCCCCAGACATTGGTTTAGTGGCACCCTTCAAATGGGAGAACTTAGGCTACGGGACAATTTAG 3012 45.55 MDDLGAQVVPPIFIHQSLTSRYTDLPSIPKKRPLSYHQGQLHPHTWNPKAWDWDSSKFLTKPSNLNNTTLDDHDDTLRLNLGGRYVEDPVSKPPKKVRPGSPASVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSSTGNLDIVGLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLAASAPDALAMLSQKSTVSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSSPPLLQTLFPVQSIEETNSNGKMPIRKEINGVEGRKPPSSNIPFELFRELDGARPNSFQTIPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWEQLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQLASHKDGKIHLNKSSKAWSNPELTSVSPLAVVSGQKTSFLLRGRNLKNPGTRIHCTSMGGYISEEVMGLSSQGRYDEIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFDEFKVPDISSESHSSVSSQPRLREDILQFLNELGWLFQRERSSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISEIQLLNRSVKRRCRRMVDLLKKYLFPPNFIGPGGITPLHLAASMADADDLVDALTNDPLEIGLECWSSQLDESGRSPQAYALMRGNHTCNELVKRKLGDRKNGQVSVRIGNEIEQLEVSSGERGRVKGRSCSRCAVVAARCNRRVPRSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24678164 24683010 + PI0027013.1 Cmetu07g0660 361141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0660 1003 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
Cmetu07g0660 1003 MobiDBLite consensus disorder prediction 303 405 - -
Cmetu07g0660 1003 MobiDBLite consensus disorder prediction 458 483 - -
Cmetu07g0660 1003 FunFam Squamosa promoter-binding-like protein 14 101 171 - -
Cmetu07g0660 1003 Pfam SBP domain 110 183 IPR004333 GO:0003677
Cmetu07g0660 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 787 IPR044817 GO:0003677
Cmetu07g0660 1003 SUPERFAMILY SBT domain 108 188 IPR036893 GO:0003677|GO:0005634
Cmetu07g0660 1003 Gene3D - 101 171 IPR036893 GO:0003677|GO:0005634
Cmetu07g0660 1003 MobiDBLite consensus disorder prediction 380 405 - -
Cmetu07g0660 1003 MobiDBLite consensus disorder prediction 335 352 - -
Cmetu07g0660 1003 MobiDBLite consensus disorder prediction 253 278 - -
Cmetu07g0660 1003 MobiDBLite consensus disorder prediction 256 278 - -
Cmetu07g0660 1003 MobiDBLite consensus disorder prediction 303 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0660 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2409 Cmetu-Chr4:14064083 Cmetu07g0660 Cmetu-Chr7:24678164 1.00E-118 dispersed
Cmetu06g0262 Cmetu-Chr6:4619787 Cmetu07g0660 Cmetu-Chr7:24678164 1.10E-35 dispersed
Cmetu06g2221 Cmetu-Chr6:327646 Cmetu07g0660 Cmetu-Chr7:24678164 2.50E-29 dispersed
Cmetu07g0660 Cmetu-Chr7:24678164 Cmetu07g2111 Cmetu-Chr7:21930700 2.10E-28 dispersed
Cmetu07g0660 Cmetu-Chr7:24678164 Cmetu04g3044 Cmetu-Chr4:6466251 1.20E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g2409 . 181 1013 SBP-box Gene Family AT2G47070 55.5 2.9e-240 828.6
Cmetu04g2409 . 25 1013 SBP-box Gene Family AT3G60030 54.0 6.3e-277 950.7
Cmetu07g0660 . 1 1003 SBP-box Gene Family AT1G20980 50.3 1.9e-261 899.4
Cmetu07g0660 . 1 677 SBP-box Gene Family AT1G76580 50.9 9.9e-166 580.9
Cmetu12g1305 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.0e-41 167.2
Cmetu04g2409 . 181 1013 SBP-box Gene Family AT2G47070 55.5 2.9e-240 828.6
Cmetu12g1305 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.0e-41 167.2
Cmetu04g2409 . 25 1013 SBP-box Gene Family AT3G60030 54.0 6.3e-277 950.7
Cmetu07g0660 . 1 1003 SBP-box Gene Family AT1G20980 50.3 1.9e-261 899.4
Cmetu07g0660 . 1 677 SBP-box Gene Family AT1G76580 50.9 9.9e-166 580.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8218 PF03110 SBP 3.40E-29 No_clan Cmetu TF