Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0710 ATGGTCTTTCAGTGGCTTGATACAAATCCAAACTGCAGCGTTCAATATATTGGGCTTAGTAGCTGGGATAAACATGTGGGATATAGAAATGTTAACGTTTTGCCGCTGACGCAGGATCATATTTCCTTGTGGAAGCATGTGGATAATGGTGATGAAGGCGAGGAAGATGTGGAATTGGAGTTTGAAGATGAATACAAAGATTACAAGAACTGGGGCCTCGAACATTTTCTTGAAAACTGGGATTTATCAGATGTACTTTTCTGTGTAGATTCTGGAGAAACACTTGTGCCTGCTCATAAAGCTATCTTATTTGCTTCGGGAAACTTTCCCTTGAATTTGTCGCAAGTTGTCGTGCAGCTACATGGAGTATCATATCCAGTTCTCCATGCTCTTCTTCAATATATCTACACAGGTCAAACTCAGATTCTGGAGTCTCAACTTGGTTCCTTGAGGGATTTAGCCTTACAACTTGAAGTGTTAGCGTTAGTTAACCAGTGTGATGACATGATGGGACAATTAAAACTGAACAAGAAGTTGTTGGACTCAGGCAATAGGGTGGAATTATCATATCCAAGGACTCAGCCCCATTGTACGACAGTATTTCCCTCCGGGCTTCCACTAAACGTACAGAGGCTCAAACAATTACAATGTACTGGCGAGTTCAGTGATGTGTCCATCTATATACAAGGTCATGGGTTTGTTGCCCATGTGCACAAAATCATTCTTAGCTTATGGAGCATGCCATTTGAAAGGATGTTTACCAATGGAATGAGTGAAACAGCGTCCTCTGAGGTTTATATTAGGGATGTATCACCAGAAGCTTTTCAAACCATGCTCAAGTTCATGTATAGTGGAGAATTGAGTAAAGATGGTACTATGGAATCTGATGTCTTGTTACTTCAACTACTATTTTTAGCTGATCAATTTGGTGTCTCTCTTCTTCATCAAGAATGCTGCAAAATTCTTCTAGAATGCCTTTCGGAGGATTCAGTATGTTCCATCCTTCAAGTTGTTTCATCAATTCCATGCTGTAAGCTCATTGAAGAAACTTGTGAGAGGAAGTTCTCAATGCACTTTGATTATTGTACGACTGCAAACATTGAATTTGTTATATTAGATGAGTCAACTTTCCGCAAAATCCTTCAGTGCCCTGATTTGACAGTGACGTCTGAGGAAAAAGTACTCAATGCAATCTTAATGTGGGGTTTAGAAGCAAGTGAATTATGTGGGTGGATGGCAGTAGATGAGCTTATGACATTTTCAACCCCTGAAATCCTTTTTGGTGAGAAACTTCAATCAGTTCAGGATTTGCTTTCTCTTGTGCGATTTCCATTACTCCCATATGCCTTGTTGGAGAAGTTGGAGAACAGTAGCATTAGCAGGAAGATTCGTACCTTTAAGAATCTTGTGAAGGAGGCTATCGACTTTGTGAAACTTGAACCATCAAGCCTAGAGGACAAGAAGAAGAACAATGTGAGATTTCAACATAGACGGTCTAGTTATAAGGAGCTGCAGTACATTTGTGATGGGGACAGCAACGGAGTTCTATTCTTTGCCGGTACATCATATGGAGAGCACCAGTGGGTTAATCCCATTCTTTCAAAGAAAATTACTATTACGGCTAGCAGTCCACCTTCAAGATATACAGATCCAAAGGTTCTGGTCTCAAGAACTTACCAGGGAACTTCCTTTGCGGGCCTTCGCGTGGAAGATGGGAAAACTTGTTCATGGTGGATGGTAGATATTGGCGAAGATCATCAGCTGATGTGCAATTACTACACATTAAGACAAGATGGGTCAAGGGCATTCATCAGATATTGGAATCTTCAGGGGTCATTCGACGGGAAAACTTGGACAAACTTGCGAGTACATGAGAACGATCAGACGGTCTGCAAACCTGGTCAGTTTGCGTCATGGCCAGTAACTGGACCAAACGCTTTACTTCCATTTAGATTCTTCCGTGTTCTTCTCACAGCCCCAACAACTGATGCTTCAAATCCATGGAACTTGTGCATTTGCTTTCTGGAACTTTATGGCTACTTCCTCTAA 2049 41.29 MVFQWLDTNPNCSVQYIGLSSWDKHVGYRNVNVLPLTQDHISLWKHVDNGDEGEEDVELEFEDEYKDYKNWGLEHFLENWDLSDVLFCVDSGETLVPAHKAILFASGNFPLNLSQVVVQLHGVSYPVLHALLQYIYTGQTQILESQLGSLRDLALQLEVLALVNQCDDMMGQLKLNKKLLDSGNRVELSYPRTQPHCTTVFPSGLPLNVQRLKQLQCTGEFSDVSIYIQGHGFVAHVHKIILSLWSMPFERMFTNGMSETASSEVYIRDVSPEAFQTMLKFMYSGELSKDGTMESDVLLLQLLFLADQFGVSLLHQECCKILLECLSEDSVCSILQVVSSIPCCKLIEETCERKFSMHFDYCTTANIEFVILDESTFRKILQCPDLTVTSEEKVLNAILMWGLEASELCGWMAVDELMTFSTPEILFGEKLQSVQDLLSLVRFPLLPYALLEKLENSSISRKIRTFKNLVKEAIDFVKLEPSSLEDKKKNNVRFQHRRSSYKELQYICDGDSNGVLFFAGTSYGEHQWVNPILSKKITITASSPPSRYTDPKVLVSRTYQGTSFAGLRVEDGKTCSWWMVDIGEDHQLMCNYYTLRQDGSRAFIRYWNLQGSFDGKTWTNLRVHENDQTVCKPGQFASWPVTGPNALLPFRFFRVLLTAPTTDASNPWNLCICFLELYGYFL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24400965 24407901 - PI0014021.1 Cmetu07g0710 361191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0710 682 SMART BACK_2 332 455 IPR011705 -
Cmetu07g0710 682 ProSiteProfiles BTB domain profile. 222 291 IPR000210 GO:0005515
Cmetu07g0710 682 Pfam BTB And C-terminal Kelch 338 402 IPR011705 -
Cmetu07g0710 682 Gene3D Potassium Channel Kv1.1; Chain A 70 186 IPR011333 -
Cmetu07g0710 682 Gene3D Potassium Channel Kv1.1; Chain A 193 357 IPR011333 -
Cmetu07g0710 682 Pfam F5/8 type C domain 539 671 IPR000421 -
Cmetu07g0710 682 SUPERFAMILY POZ domain 208 323 IPR011333 -
Cmetu07g0710 682 ProSiteProfiles BTB domain profile. 83 144 IPR000210 GO:0005515
Cmetu07g0710 682 Gene3D - 532 680 - -
Cmetu07g0710 682 SUPERFAMILY Galactose-binding domain-like 525 681 IPR008979 -
Cmetu07g0710 682 SUPERFAMILY POZ domain 72 170 IPR011333 -
Cmetu07g0710 682 CDD BTB_POZ_ZBTB_KLHL-like 221 297 - -
Cmetu07g0710 682 SMART BTB_4 83 174 IPR000210 GO:0005515
Cmetu07g0710 682 SMART BTB_4 222 326 IPR000210 GO:0005515
Cmetu07g0710 682 Pfam BTB/POZ domain 212 324 IPR000210 GO:0005515
Cmetu07g0710 682 Pfam BTB/POZ domain 74 170 IPR000210 GO:0005515
Cmetu07g0710 682 Gene3D - 358 477 - -
Cmetu07g0710 682 PANTHER OS05G0345500 PROTEIN 1 682 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0710 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30