Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0720 ATGGATCTCAGAATCATGGGACTAGACTCACCAATCTTCTCCACCCTCCAGCACGTGATGGACCTCGCCGACGACGCCGATAAGTCCTTCAGCACACCCACCAGGACTTACGTTCGGGACGCCAAGGCTATGGCAGCCACTCCAGCCGACGTCAAGGAGTATCCGAATTCCTATGTTTTCGTCGTTGACATGCCGGGGTTAAAGGTCGGTGACATCAAGGTTCAGGTTGAGGATGACAATGTGCTACTGATAAGTGGGGAGAGGAAGAGGGAGGAGGAGAAAGAAGGAGCTAAGTATGTGAGAATGGAGAGGAGAGTTGGCAAGTTAATGAGGAAATTTGTGTTGCCGGAAAATGCTAACATTGATGCCATATCGGCGGTTTGTCAGGATGGTGTGCTCACTGTGACTGTGCAAAAGTTGCCACCACCTCAGCCTAAGAAGCCCAAGATCGTTGAGGTCAAGGTCAATTGA 471 50.74 MDLRIMGLDSPIFSTLQHVMDLADDADKSFSTPTRTYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKVGDIKVQVEDDNVLLISGERKREEEKEGAKYVRMERRVGKLMRKFVLPENANIDAISAVCQDGVLTVTVQKLPPPQPKKPKIVEVKVN 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23481728 23482904 - PI0012321.1 Cmetu07g0720 361201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0720 156 Pfam Hsp20/alpha crystallin family 50 154 IPR002068 -
Cmetu07g0720 156 FunFam 17.3 kDa class II heat shock protein-like 11 155 - -
Cmetu07g0720 156 SUPERFAMILY HSP20-like chaperones 14 150 IPR008978 -
Cmetu07g0720 156 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 13 153 IPR031107 -
Cmetu07g0720 156 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 156 IPR002068 -
Cmetu07g0720 156 Gene3D - 8 153 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0720 K13993 - - csv:101212955 243.817
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1749 Cmetu-Chr5:20851399 Cmetu07g0720 Cmetu-Chr7:23481728 1.00E-08 dispersed
Cmetu07g0720 Cmetu-Chr7:23481728 Cmetu08g0178 Cmetu-Chr8:15574439 5.60E-21 dispersed
Cmetu07g0720 Cmetu-Chr7:23481728 Cmetu07g1652 Cmetu-Chr7:23484024 4.90E-41 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g130 . . . . . . . . . . Cma01g01714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1780 . . . . . . . . Bhi09g03104 Tan01g4592 Cmetu07g0720 . Hepe01g1905 Mch11g0438 . . . . . . . . . . . Cme07g00197
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74