Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0812 ATGTTTATGTGCTGGCTTATGTGTAGCTTTAAGTGGATAACAATGGAGGGATCATCTGATCACCTTAGGAACCTGGATGATATATCTGGGGTTTGTGAGGAAGATATACTTGCTGACCCTTATGTGCGTTCTCATAAATGGAGTGATATTAGTTTGAGGCAATGGTTGGATAAGCCAGGAAGATCAGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCATGCTTTGTAATGTCTTCTTTCAACCATGTAACCTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCATAAATAGTCAAATGGCAGAGGTTAAAACATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGCGAGGGTTTTCGATCTGTTATGACCCCTATAAACGCTTTGTCTGAAACTAGCTGCATGCAGTCAAGTTCAATATATGCTGCCCAAGCATCCTTAAATGAAGGGTCTGGGAAATGTAGAAAAAAAGATAGAAGACATATTGAAGAAACAGAAGATAAGGTGCAATCATTTCCCATGAAACAGATATTGGCTATGGAGACCACATGGTACACCAGCCCAGAAGAGGCTTCTGATAGCCCAAGTTCCAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAATAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTACTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACTAATCGACCTAAGCTAAGTGAATTATTGCAAAGTGAATTTCTCAATGAACCGAAAGATGATCTAGAAGAACGTGAAGCAGCAATCAAGCTTCGAAAAAAAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACCATTTCATTTCTATGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATTGGGTCACGCACAGATCTTGTGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATGCCTCCTGCCAGGAATACTGATTCTGCTGGTCTGGGATCAAGGAAACGATTTAGACCAGGAATTTTGACCCATGATATAGAAGCATGTGGTGATAATCTTGATGATTGCGAGAAGACAAGTTCAGACAATGATAACGAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTAGCATACTTTTTGATGAGAGGTAGAGTAAACAAGCCATCAAGGCAGTTTGTTAAACACTCATCAATAAGTAGTGATGGTAGGGGGTCCGTAGTCTTAACTGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATAGGCAAGGTGCGTGGATAAGTCCATTCCTGGAGTTAAAAGTTAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTGTGTTCTCTCAGTTTTGATCGTGATGGAGAATTTTTTGCCACAGCTGGTGTTAATAGGAAAATTAAAGTATTTGGATATGATTCAATTGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCCAGCAGGTCAAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTATGGGATGTCACAAGAAGTCAAGTAGTCACTGAAATGGGAGAACATGAGCGGCGTGTATGGTCCATCGACTTCTCATCAGCGGATCCTACAATTTTGGCAAGTGGGAGTGATGATGGATCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGAACAATCAGAACAAAAGCCAACGTCTGCTGTGTACAATTTCCTGTGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGACATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAATATATAGACTCAAGCACTCTTGTTTCTGCATCCACTGATAACACTTTGAAGCTCTGGGATTTGACCATGTCCACATCCCGGGTTGTTGATTCTCCAGTTCAGTCCTTCACTGGCCACATGAATATCAAGAACTTTGTGGGGCTGTCCGTTTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTTGTCTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATAGATCCTCTTTCAAGTCATGAAATGGATGACTCTGCACAATTTATCTCTTCAGTTTGTTGGCGGAGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2523 40.39 MFMCWLMCSFKWITMEGSSDHLRNLDDISGVCEEDILADPYVRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGINSQMAEVKTSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSIYAAQASLNEGSGKCRKKDRRHIEETEDKVQSFPMKQILAMETTWYTSPEEASDSPSSSASDIYRLGVLLFELFCSFSSREEKNRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSELLQSEFLNEPKDDLEEREAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKIGSRTDLVKDNHLPLNLPSMPPARNTDSAGLGSRKRFRPGILTHDIEACGDNLDDCEKTSSDNDNEQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGAWISPFLELKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLTMSTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPALSYKFQIDPLSSHEMDDSAQFISSVCWRSQSSSLVAANSTGHIKILEMV 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22035025 22040926 - PI0007039.1 Cmetu07g0812 361293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0812 840 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu07g0812 840 Gene3D Transferase(Phosphotransferase) domain 1 48 311 - -
Cmetu07g0812 840 PANTHER PROTEIN SPA1-RELATED 2 45 840 IPR044630 GO:0009640
Cmetu07g0812 840 PRINTS G protein beta WD-40 repeat signature 723 737 IPR020472 -
Cmetu07g0812 840 PRINTS G protein beta WD-40 repeat signature 639 653 IPR020472 -
Cmetu07g0812 840 PRINTS G protein beta WD-40 repeat signature 596 610 IPR020472 -
Cmetu07g0812 840 SMART WD40_4 698 736 IPR001680 GO:0005515
Cmetu07g0812 840 SMART WD40_4 655 694 IPR001680 GO:0005515
Cmetu07g0812 840 SMART WD40_4 524 559 IPR001680 GO:0005515
Cmetu07g0812 840 SMART WD40_4 799 838 IPR001680 GO:0005515
Cmetu07g0812 840 SMART WD40_4 612 652 IPR001680 GO:0005515
Cmetu07g0812 840 SMART WD40_4 745 784 IPR001680 GO:0005515
Cmetu07g0812 840 SMART WD40_4 570 609 IPR001680 GO:0005515
Cmetu07g0812 840 SUPERFAMILY WD40 repeat-like 528 837 IPR036322 GO:0005515
Cmetu07g0812 840 Gene3D - 505 840 IPR015943 GO:0005515
Cmetu07g0812 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 619 656 - -
Cmetu07g0812 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 705 745 IPR001680 GO:0005515
Cmetu07g0812 840 Pfam WD domain, G-beta repeat 701 736 IPR001680 GO:0005515
Cmetu07g0812 840 Pfam WD domain, G-beta repeat 617 652 IPR001680 GO:0005515
Cmetu07g0812 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 619 661 IPR001680 GO:0005515
Cmetu07g0812 840 ProSitePatterns Trp-Asp (WD) repeats signature. 723 737 IPR019775 -
Cmetu07g0812 840 Coils Coil 305 325 - -
Cmetu07g0812 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 705 737 - -
Cmetu07g0812 840 MobiDBLite consensus disorder prediction 382 403 - -
Cmetu07g0812 840 SUPERFAMILY Protein kinase-like (PK-like) 28 312 IPR011009 -
Cmetu07g0812 840 SMART serkin_6 22 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0812 K26557 - - csv:101205812 1586.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2131 Cmetu-Chr4:33366838 Cmetu07g0812 Cmetu-Chr7:22035025 1.30E-48 dispersed
Cmetu07g0812 Cmetu-Chr7:22035025 Cmetu09g1307 Cmetu-Chr9:1518565 9.70E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g219 . . . . . . . . . . Cma01g01208 . Car01g01033 Car09g00778 Sed04g2397 . . Bhi09g03427 Tan01g4395 Cmetu07g0812 . Hepe01g1386 . . . . . . . . . . . Cone14ag1062 Cone15ag1054 . . . . . . . . . . . . . Cmo01g01262 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45