Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0822 ATGGCTTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTGTTGGAAGAAGACGAATACAAGGTTTATATTGGAGGGATTGTGGGGCAACTTCGTGAGAGTTTGACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGCATCATAGCCTCATTACTAATATATTATCTGTATATGATATGACTGTCATGGACTATCCTAGACAATATGAAGGCTGCCCTTTACTCACTATGGAGATGATCCACCACTTCTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGGCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCCTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGATATGATTTACAAGCAAGCACCACGGGAACTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGCTCAGAATGGCCTCCGCTTGACAGAGCCCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCGTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATCGATATCCATTGCCATATCCAAGGTGACGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTCCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTGATGCTTAACCGAGATGACATTGATATTTTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGGGCAGAGGTTCTTTTCTCAGAGATGGATGCTTCCGCTTCACTAATTTCAATTGAATTGCCAAATATTGAAGAGAAAGATGGTCTTCCAATTGAAGCCTTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAACGTGCTTCAGAAAATAACAGCTTCAAATTTACTTCAAGAGAAACTGGTTAGTTCCGGCTCTTTAGACAGAAGCCAATTGCTTGACTTATCTCTTGAAAAACTAATCTTGGAATCTGAGACATCTGAAGAAAATATTAGAAGTCCCCGATTGAAGATGCAGACAAAGCATTCTAGGCCTTCTTCCTTATTATCTAACGCTGCAAGTTCAGTGATATCAAAGATTGAACCCTCAGAATTGCAGGTTGCTCTCCAACTACCACCTCAGTCTAAAATAATCACTCAACGAATACCTCAACCGCCATTGTCTACGCCAGTCTCCTTCCGTAATTCTGTGCAAGGTTCACCTCGCCCTATACTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACACGATCATTCCAATTTTAGTGGTAAAGAACTTATACATCCAGAGACAACATCTTCACCATCATCTGCTCTGTTGAGTACAACTGCTCTAGATTCACCTAAAGATGTTCAACCTAGTAAGCTTCCTATTTCTCCTCTCCCTCTAGTATTAGAGCCAAGATCTACATCAGAAAATTCTTCGACCACCGCATCAACTTCAACCATTCCCGATCCATTGTCCCTTCACCAACTTTCTTTGAAACCTATTAAATCTTTAGTTTCTCAAATGACTCAAACCACATCACAAGTGAGAAGTCAATTATCACCATCTTTGTTACAACCAACTTCTACCTCTTATATTGGGGAATCCCCACCCTCTCTCAATGATAGCGAAGCTTCAAGATCATCATCTCCTTTGTTAAGATCATCTCCATCTTCTTGTACTAAAGAATTAATTTACGTTTCCACTCCTTCTCCCCCTCCTCCCCCTCCTCCTCCTCCCCTCCCCCATTTTGATTCACCTTCACCTTTAGCAACATCTCCACCTTCTAGTAGGACAAATGGTTCGATTTTCCCATCCTCACCACAACCTCCTTCTACGACACAACTGTTATCTTCTACCAAGAAAACAATTCAAACTGTTCCTCAATTTTCTTCGTCTGATGATCGTCTAGTTTCTTCAGAGTCACCTATAAAGAACTTGACGCATGTGCCTCTCCCTCCTCCGCCTCCTCCTCCTCCTCCATGTTGTAGCCCTAACTTGGGCACTAGTGTTGTCTCGCCAACATCAGGCTCTACGAACACATTCATGCATGTTCCCCCAGTTCCACCTCCAGCCCCACCCTTGCCTCCATCTTCTTTCAGTTCTAGATCTACTTGTGGTTCTAGTATCATGCCTTTAGGGCCACCACCACCGCCACCACCTCCTTCAAGTCTTGCACCACAAGATTTTGCCACAGTAGTTAGGACCCTGATGAATGTATCTGGCCCTCCACCTCCCCCACCTCCCCCATTACATTCATCTCTAGGTCCTAATACTGTATCTTCAGTGCCGCCCCCGCCACCCCCTCCTAGTCTTGCACCAAATGTTGCAACAACCGTTAATTTGACACATGTCTCTGGCCCCCCTCCTCCTCCTCCACCACCTTTATCAAATTCTGGACCCACCTTATGTTCAGGTGTTGCAACGTCAGCTCCGCCTGCTCCACCTCCTCCAAGTTTCTCAATGAAGGATTCTGCAACACATGCTCCACCTGCACCCCCTCCTCCAGGTCTCAGCGGTAATACACTCTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCATTAATAACAGCAACATACCTTCTGTTCCTGGACCACCTTCCAGTGCTCTATTCAATGCAAAGGGACGTGGCCTTGGACGTTTGAACCCCCAAAACCAGTCTCAACCTAAAAGATCCAATCTAAAGCCTTATCACTGGCTAAAATTAACAAGGGCCATGCAAGGAAGCTTGTGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCTGGAGGTTCGGGTAATTCAAATCGCCGAGCCTCAGGGCCTAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTTTCTAAAGTTAAGATTCCTTTGCCTGACATGATGTGTTCAGTCCTTGCATTGGATGACTCGGCCTTAGATGTGGATCAGGTTGACAACCTAATCAAGTTTTGTCCAACAAAGGAAGAAATGGAATTACTAAAGGGGTACAGTGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTTCAGAATTAATGAAAGTTCCACGAGTAGAGTCCAAGCTTAGGGTATTTTCTTTCAAGATACAATTCCGATTGCAGGCCTCTGACCTTAGAAATAGTTTGAATACTATTAATTCGGCATCTGAAGAGATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCATTGGGTAACGCTTTGAACCACGGAACGGCTAGAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTCTAGATTTTCCAAAGGACCTTGTGAGTTTGGAAGCTTCTACGAAGATACAACTGAAATACTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAGAATGATGGACCCATTTCTGAAACTTTTTGCCGGACGTTAAAAGACTTCCTTTCTCATGCCGAGGCCGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAGCGTGGGTAGAAATGCCGATGCACTGGCTCTTTATTTCGGCGAAGATCCTGCACGTTGCCCTTTCGAGCAAGTTGTTTCTACACTGCTCAATTTTGTGAGGATGTTTGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTTGAATATGAAAAGAAAAAAGCACAGAAAGAAGCCACAGAAAGGGAGAAGTTGAAGCTCGGTACCCCGAAAAAGGAGTCAGGATTCTTAATGCAGACTCCAATCTAG 4218 43.55 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGEHHSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDASASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLDRSQLLDLSLEKLILESETSEENIRSPRLKMQTKHSRPSSLLSNAASSVISKIEPSELQVALQLPPQSKIITQRIPQPPLSTPVSFRNSVQGSPRPILRYHSAPSALGITALLHDHSNFSGKELIHPETTSSPSSALLSTTALDSPKDVQPSKLPISPLPLVLEPRSTSENSSTTASTSTIPDPLSLHQLSLKPIKSLVSQMTQTTSQVRSQLSPSLLQPTSTSYIGESPPSLNDSEASRSSSPLLRSSPSSCTKELIYVSTPSPPPPPPPPPLPHFDSPSPLATSPPSSRTNGSIFPSSPQPPSTTQLLSSTKKTIQTVPQFSSSDDRLVSSESPIKNLTHVPLPPPPPPPPPCCSPNLGTSVVSPTSGSTNTFMHVPPVPPPAPPLPPSSFSSRSTCGSSIMPLGPPPPPPPPSSLAPQDFATVVRTLMNVSGPPPPPPPPLHSSLGPNTVSSVPPPPPPPSLAPNVATTVNLTHVSGPPPPPPPPLSNSGPTLCSGVATSAPPAPPPPSFSMKDSATHAPPAPPPPGLSGNTLSNVNGTSSQSHVGINNSNIPSVPGPPSSALFNAKGRGLGRLNPQNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDSALDVDQVDNLIKFCPTKEEMELLKGYSGDKDNLGKCEQFFSELMKVPRVESKLRVFSFKIQFRLQASDLRNSLNTINSASEEIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGPISETFCRTLKDFLSHAEAEVRSLASLYSSVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFVRAHEENCKQLEYEKKKAQKEATEREKLKLGTPKKESGFLMQTPI 1405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23966090 23975325 + PI0021260.1 Cmetu07g0822 361303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0822 1405 SMART it6_source 670 1405 IPR015425 -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 1040 1057 - -
Cmetu07g0822 1405 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 747 764 - -
Cmetu07g0822 1405 Gene3D Formin, FH2 domain 1005 1396 IPR042201 -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 839 873 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 981 995 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 938 967 - -
Cmetu07g0822 1405 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 1040 1061 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 884 898 - -
Cmetu07g0822 1405 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 783 797 - -
Cmetu07g0822 1405 Coils Coil 1361 1388 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 570 591 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 667 688 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 612 999 - -
Cmetu07g0822 1405 PANTHER FORMIN-J 1 1386 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 765 782 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 612 665 - -
Cmetu07g0822 1405 SUPERFAMILY Formin homology 2 domain (FH2 domain) 912 1380 - -
Cmetu07g0822 1405 Pfam Formin Homology 2 Domain 988 1360 IPR015425 -
Cmetu07g0822 1405 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cmetu07g0822 1405 Gene3D - 196 341 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 550 591 - -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 810 825 - -
Cmetu07g0822 1405 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Cmetu07g0822 1405 SMART PTEN_C2_2 197 337 IPR014020 -
Cmetu07g0822 1405 MobiDBLite consensus disorder prediction 689 745 - -
Cmetu07g0822 1405 ProSiteProfiles Formin homology-2 (FH2) domain profile. 986 1386 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0822 K28090 - - csv:101214019 2275.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1238 Cmetu-Chr2:23565422 Cmetu07g0822 Cmetu-Chr7:23966090 2.40E-244 dispersed
Cmetu04g2809 Cmetu-Chr4:16880725 Cmetu07g0822 Cmetu-Chr7:23966090 5.80E-257 dispersed
Cmetu07g0822 Cmetu-Chr7:23966090 Cmetu12g0477 Cmetu-Chr12:569021 2.20E-233 dispersed
Cmetu02g1753 Cmetu-Chr2:20671258 Cmetu07g0822 Cmetu-Chr7:23966090 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1209 . 465 941 FH2 protein (formin) Gene Family AT3G25500 65.8 1.1e-163 574.7
Cmetu11g1138 . 413 838 FH2 protein (formin) Gene Family AT3G25500 53.9 3.5e-122 436.8
Cmetu02g0328 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.5 6.8e-102 369.4
Cmetu04g2000 . 624 833 FH2 protein (formin) Gene Family AT2G43800 64.8 3.0e-66 250.8
Cmetu11g1515 . 320 621 FH2 protein (formin) Gene Family AT4G15200 56.5 2.0e-53 207.2
Cmetu11g1515 . 475 938 FH2 protein (formin) Gene Family AT5G54650 63.9 2.5e-161 566.6
Cmetu11g1138 . 33 857 FH2 protein (formin) Gene Family AT5G67470 53.9 1.1e-212 737.3
Cmetu10g1209 . 503 937 FH2 protein (formin) Gene Family AT5G67470 61.0 3.1e-127 453.4
Cmetu02g0328 . 500 895 FH2 protein (formin) Gene Family AT5G67470 51.1 5.6e-105 379.4
Cmetu04g2000 . 611 825 FH2 protein (formin) Gene Family AT5G67470 61.5 5.7e-65 246.5
Cmetu10g0982 . 338 830 FH2 protein (formin) Gene Family AT1G59910 51.4 6.6e-125 445.7
Cmetu04g2000 . 651 833 FH2 protein (formin) Gene Family AT5G48360 54.1 1.3e-46 185.3
Cmetu04g2000 . 623 825 FH2 protein (formin) Gene Family AT3G07540 50.2 7.7e-48 189.5
Cmetu04g2809 . 942 1253 FH2 protein (formin) Gene Family AT1G42980 51.4 7.4e-70 261.2
Cmetu04g2809 . 1 1260 FH2 protein (formin) Gene Family AT1G31810 68.4 0.0e+00 1203.7
Cmetu02g1238 . 915 1222 FH2 protein (formin) Gene Family AT5G07650 70.8 8.1e-116 415.2
Cmetu07g0822 . 1067 1389 FH2 protein (formin) Gene Family AT5G07650 64.7 3.5e-111 399.8
Cmetu04g2809 . 926 1257 FH2 protein (formin) Gene Family AT5G07650 59.9 1.3e-108 391.3
Cmetu02g1753 . 919 1231 FH2 protein (formin) Gene Family AT5G07650 61.4 2.4e-104 377.1
Cmetu12g0477 . 984 1241 FH2 protein (formin) Gene Family AT5G07650 71.7 1.6e-100 364.4
Cmetu02g1238 . 842 1215 FH2 protein (formin) Gene Family AT5G07770 65.3 4.9e-126 448.7
Cmetu07g0822 . 992 1381 FH2 protein (formin) Gene Family AT5G07770 59.3 6.9e-120 428.3
Cmetu04g2809 . 862 1251 FH2 protein (formin) Gene Family AT5G07770 56.0 2.1e-116 416.8
Cmetu02g1753 . 842 1223 FH2 protein (formin) Gene Family AT5G07770 56.7 4.0e-112 402.5
Cmetu12g0477 . 907 1245 FH2 protein (formin) Gene Family AT5G07770 63.5 7.6e-111 398.3
Cmetu07g0822 . 966 1392 FH2 protein (formin) Gene Family AT3G32400 73.1 8.0e-170 594.0
Cmetu02g1753 . 849 1232 FH2 protein (formin) Gene Family AT3G32400 67.7 1.4e-142 503.4
Cmetu04g2809 . 862 1256 FH2 protein (formin) Gene Family AT3G32400 66.0 1.6e-141 500.0
Cmetu02g1238 . 842 1222 FH2 protein (formin) Gene Family AT3G32400 64.0 7.3e-131 464.5
Cmetu12g0477 . 877 1241 FH2 protein (formin) Gene Family AT3G32400 57.1 1.9e-110 396.7
Cmetu07g0822 . 1 1392 FH2 protein (formin) Gene Family AT2G25050 52.3 0.0e+00 1171.0
Cmetu02g1238 . 843 1222 FH2 protein (formin) Gene Family AT5G07780 60.0 3.0e-110 396.0
Cmetu07g0822 . 993 1382 FH2 protein (formin) Gene Family AT5G07780 54.6 5.8e-106 381.7
Cmetu04g2809 . 863 1252 FH2 protein (formin) Gene Family AT5G07780 52.7 4.6e-103 372.1
Cmetu12g0477 . 908 1240 FH2 protein (formin) Gene Family AT5G07780 57.3 9.0e-99 357.8
Cmetu02g1753 . 849 1223 FH2 protein (formin) Gene Family AT5G07780 52.8 2.5e-96 349.7
Cmetu02g1238 . 914 1229 FH2 protein (formin) Gene Family AT5G07760 70.2 3.7e-114 409.8
Cmetu07g0822 . 1066 1389 FH2 protein (formin) Gene Family AT5G07760 66.2 2.3e-111 400.6
Cmetu04g2809 . 936 1257 FH2 protein (formin) Gene Family AT5G07760 61.3 9.8e-107 385.2
Cmetu02g1753 . 918 1231 FH2 protein (formin) Gene Family AT5G07760 63.5 3.2e-105 380.2
Cmetu12g0477 . 983 1241 FH2 protein (formin) Gene Family AT5G07760 72.2 1.4e-100 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42