Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0880 ATGGTATATGCAAAAGGGGGGACGAACCCTAAATCCAAGCCCAATCCAACTTATCAGCTCACGAAGAATGTGTACCCGATTGGTGGCATCCAAGTGGAATTTCCATTCCGACCATACGGTTCGCAGCTGGCGTTTATGGGCAGAGTTATATCCACCCTTGATCGAGCTCAGCGAGAGGGCCATTGCCACGCATTGCTGGAATCTCCGACTGGAACCGGGAAGTCGCTTTCACTTCTCTGCTCGAGTCTCGCTTGGCAGAAGAATTACAAGACAAAGAATCAGGATGGTAATTCCTGTCACACGAAGCCTGCTCCAGAGGCTGCCACAGATCCTCTCGGTTTTGGAGGTGGATTTATTCCCGAAAATATGTTGGGTTTTGTAGTGTCTACAGATACTGAGTCATCTCTTCCAGGGCCAAACAACAAAAGTCAGAAGAAAAAAACAGCCCCAACCATATACTACGCATCGAGGACACATTCACAGATATCACAGGTGATCCGTGAGTATAAGAAAACTACCTATCGAGTGCCAATGGCAGTGTTGGCATCAAGGAAACATCTTTGCACAAATCCTTATGTACGAGGGAAAGATAATTTAGATGAAGAATGCAAACTACTTTTGAAGGATCAAGATACAGGATGCAGTGAATTTAAAAACGCAAACAAGGTTAAATGTCATCCAACTCTTCAGAAAGGAGGATGTCATGAGGTTCATGACATTGAAGATTTAGTGAAAGTTGGAGAAGCTGTAAAAGGTTGTTCATATTATGCAGCTCGCTCGATGGCAGACGATGCACAACTGGTATTTTGCCCATATAGCTATATTATCAATCCAGTTATTCGAGGAGCAATGGATGTAGATATTAAGGGTGCGATTGTGATCTTTGATGAAGCCCACAATATAGAGGATATTGCACGTCATGGTGGTAGTGTGGATATTGAAGAGGATACTTTAAATAAATTGCAGATGGAGTTAGAGCAACTATGTCCTGTTAATTCTTTGGTTTACCAGCCTCTGTATGAAATGACACAGGATCTCACAAGTTGGATTGACCAGAGGAAGACCACATTGCAGAAGCGCGAGTTTCAGCATTATGTCACCTGTTGGACTGGCAATCATGCTCAAAGGGAGCTCCAAGAAGCTAATATAACTCAACAATGCTTCCCCATTTTGCTCGAATGTGCAACAAAGGCTATTAAAGCAGCTTCAGATACGGAGTCAGATGATGCACATTTGAGTGGCCTGTCAGTGATAACACTGGAAGGGTTATTCTCTTCACTGACATATTTCTTCTCAAGAAATGGTTGCCACATGTCTGACTACCAGCTTGCATTACAACGCTACATTAAAAGAGATCCTGGAAAAGCTTATGCTGAATGGACGGTTACTTTAAGTTTGTGGTGCTTGAATCCAGCTGTTGTATTTAGAGACATTGGTGATCTTTCCTTATCGGTTATTTTGACATCTGGGACCCTGTCACCTATGAATTCCTTTTCATCTGAACTAGGAGTTCAGTTTGGAACTTCATTGGAAGCTCCTCATGTAATTGATGTGGAATCTCAGGTGTGGCCAGCTATTATATCAACTGGTCCTGGAAACTATCCACTCAATGGAAGTTATAAAACAGCCGATGGATATGCATTCCAGGATGCTCTAGGAAAATCTTTAGAGGAGATATTTTTTATCGCTCCTGGTGGCTGTCTTGTGTTCTTCCCCAGTTATAAGCTGATGGAGAAACTCCAAAATCGTTGGTCTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCCCTTTTTGTTGAGCCAAGAGGAGGAGCTCAAGAGGATTTTGATTCCATATTGAAAGGTTATTACGATACTATACGTCTTGGTGATAACTTTGCAGTCGGGAAGAAGAGGCGAGGTAAGAAGGTCAAACCCAATCACCCGTATGTGGTTGGCTGTGAAAATCCCAAGGAGGGTGCAGCACTCCTTGCAGTTTTTCGAGGAAAGGTATCAGAAGGAATAGACTTTTCTGATGATAATGCTAGGGTGGTTATAATAGTTGGTATTCCATTTCCAAATGTAAATGATATTCAAGTTGCATTGAAGAAAAAGTTCAATGACACGTATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAGGCCTTCCGAGCTCTAAATCAAGCTGCAGGACGTTGTATTCGACACAAATTTGACTATGGTGCCATCGTGCTATTAGATGAGCGTTTCCAGGAAGAGAGGAACAGGATTTACATTTCAAAGTGGCTAAGAAAATCCATTAAACAATTTGATAACTTTGAACAGTCTATGGAGGAGCTGAAATCCTTTTTCAGCCACATTAAGGAGCGCATTAGCAACAATACAGAAAGTGAGTTGCCAAATTCTGAGAATGAGGGGCGTATTACTTCTACCTGCCCAAGTAGTTGTAGAAGAACGAAGATAGAGAAATTTGACAAGTTTAATTATCGTGGGCAGAAAGCTCACGAAGATGCAAAAAACTGTATAATTGATCTGGAGTGCAATGTTGAAACAGAAACGAGGAACCATGAGTTTCTATCTATGAATACCGTCCTTGAAGTTCCAGATTCCCCTATTGTTCAGGAGACTCCTTGTGTTGATATTGTTGGCGCCACTAGTCCAGGAGAATCCAAAGATGAAAGATCGACTTCAACTGTAATTGAGGCATATTCTGAGCTTTCTGATCAATTATCATATCCTTCACTACCTCTGATCAAATCAACAAGATCTCCTCTTACATCTGAAACTTCAATTCTGCATACTCCTGAAAGAAATGTTTCTGTGAATGCCTACAGCTTTGCACGAGATACAGAATCTTCTTTGAATATGAGTGTAAATTCTCATACCCAGAAAAGGAGGAAGTCTATCGGTATAACTGTTACGAAACTTGCTCAAGATGAGTATCTTACTGATCCCAAAACCAAAAATCCCGAATGTAACAGTGTGGACAGAAGCTCAATAATCAGCGGAAATTTGACTAGCCTAAAAGATACTAATTATGAATTTTTTCTCACGGAAAAGAAGTCCAACAGTTTAAATGTCACACAAGTGCCCAAGCTAAATGATACTATTCCTGTTTGTCTGTCATCTGGCCTTCCAATGGACAAAAAGTTGCATCTATCTTGTGCACTTTGTAGAAGCCCACTCGGTCGCCCAGAAAACCATTTAAACATAACATGCTCATTTACTGTATCATCAAAAACACACTTAATATCGATATATAAGGAAAGGTTTAAAGCTCAAACTGCCAATTCCTCAGCAAGTATACAGCTTATTATTACAGACATCTTGTTTGTTAACCAAAGGCTCCTAGTTAGGTCTTCTAAAAATTCAGGACGTGGCATATGGAGTGAGGAGGATGGTTGTGTATACAATTATGTCTTTTGCCCCTTCTGTTGCAGTGACAATTTCATTGGTGTACAGATCATGGCAACTGATGCATCAAATATTCCATTACTTAATAAAGTGATGTTTTACGTAGAGTGTTTGGAGATCCAAGACCTCAAAGCTGATACAGGAAAGGCTTCAGTAAACAAGGAAGTATCACCCGTTAGTAGCTCAGCCAAGAATAAGTATGCCGTCATGGAACCCATTGAAAATTTTTCATACTCCCCTAGCCCTCTAACCTCAGGCGGCTGGAGGTCTACTAAATTCAAAGTCAGAAGAAAAGGAACCTCATGA 3720 40.99 MVYAKGGTNPKSKPNPTYQLTKNVYPIGGIQVEFPFRPYGSQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQKNYKTKNQDGNSCHTKPAPEAATDPLGFGGGFIPENMLGFVVSTDTESSLPGPNNKSQKKKTAPTIYYASRTHSQISQVIREYKKTTYRVPMAVLASRKHLCTNPYVRGKDNLDEECKLLLKDQDTGCSEFKNANKVKCHPTLQKGGCHEVHDIEDLVKVGEAVKGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMDVDIKGAIVIFDEAHNIEDIARHGGSVDIEEDTLNKLQMELEQLCPVNSLVYQPLYEMTQDLTSWIDQRKTTLQKREFQHYVTCWTGNHAQRELQEANITQQCFPILLECATKAIKAASDTESDDAHLSGLSVITLEGLFSSLTYFFSRNGCHMSDYQLALQRYIKRDPGKAYAEWTVTLSLWCLNPAVVFRDIGDLSLSVILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVESQVWPAIISTGPGNYPLNGSYKTADGYAFQDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLQNRWSETGQWSRLNARKSLFVEPRGGAQEDFDSILKGYYDTIRLGDNFAVGKKRRGKKVKPNHPYVVGCENPKEGAALLAVFRGKVSEGIDFSDDNARVVIIVGIPFPNVNDIQVALKKKFNDTYKMSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIVLLDERFQEERNRIYISKWLRKSIKQFDNFEQSMEELKSFFSHIKERISNNTESELPNSENEGRITSTCPSSCRRTKIEKFDKFNYRGQKAHEDAKNCIIDLECNVETETRNHEFLSMNTVLEVPDSPIVQETPCVDIVGATSPGESKDERSTSTVIEAYSELSDQLSYPSLPLIKSTRSPLTSETSILHTPERNVSVNAYSFARDTESSLNMSVNSHTQKRRKSIGITVTKLAQDEYLTDPKTKNPECNSVDRSSIISGNLTSLKDTNYEFFLTEKKSNSLNVTQVPKLNDTIPVCLSSGLPMDKKLHLSCALCRSPLGRPENHLNITCSFTVSSKTHLISIYKERFKAQTANSSASIQLIITDILFVNQRLLVRSSKNSGRGIWSEEDGCVYNYVFCPFCCSDNFIGVQIMATDASNIPLLNKVMFYVECLEIQDLKADTGKASVNKEVSPVSSSAKNKYAVMEPIENFSYSPSPLTSGGWRSTKFKVRRKGTS 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24489896 24498534 - PI0020949.1 Cmetu07g0880 361361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0880 1239 MobiDBLite consensus disorder prediction 130 149 - -
Cmetu07g0880 1239 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 28 368 IPR014013 GO:0005524
Cmetu07g0880 1239 FunFam Fanconi anemia group J protein-like isoform E 138 350 - -
Cmetu07g0880 1239 Pfam DEAD_2 154 318 IPR010614 GO:0003677|GO:0003678|GO:0005524
Cmetu07g0880 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 746 IPR027417 -
Cmetu07g0880 1239 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 27 785 IPR045028 -
Cmetu07g0880 1239 FunFam Fanconi anemia group J protein homolog 533 779 - -
Cmetu07g0880 1239 SMART deadxpd 30 333 IPR006554 GO:0003678|GO:0016818
Cmetu07g0880 1239 Pfam Helicase C-terminal domain 558 765 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cmetu07g0880 1239 SMART Cxpdneu3 574 752 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cmetu07g0880 1239 Gene3D - 37 355 IPR027417 -
Cmetu07g0880 1239 CDD SF2_C_XPD 520 750 - -
Cmetu07g0880 1239 Gene3D - 533 782 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0880 K15362 - - csv:101217839 2357.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0065 Cmetu-Chr1:27605331 Cmetu07g0880 Cmetu-Chr7:24489896 2.70E-98 dispersed
Cmetu01g1005 Cmetu-Chr1:27689899 Cmetu07g0880 Cmetu-Chr7:24489896 2.60E-49 dispersed
Cmetu07g0880 Cmetu-Chr7:24489896 Cmetu07g0966 Cmetu-Chr7:24503086 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32