Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0934 ATGTCTGATGTGGCGAGTATAGCAGAGGCAGTGGCAGCGAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAACTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACAAAATTATGGATAATAATGGAATATATGGCTGGCGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCACCGCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACCGAAGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTGGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGGGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGGCCAATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCTGGAGAGAATAAGAGAACGCCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTTCTAGAGCTATATGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTGAGGGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAAAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGGAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGGTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCTGGATATGCATCACGCGACATATCAGAAAACACCAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGCTATCTGTAAGTGGTTCAGGAACTGTTGTGATCCGGTCTCCCAGGGGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACATGGATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCATCGTGATGATTCTGGTTCTCCTCAGACTCCAAAATCCAGAATGGGAATTCAAGAAAGGACTTCAAGCTTTTCTCCCGAAGATAGTGCATCAAACCTTGCGGAGGCAAAGGCTGCAATACAAGCAGGATTGAAGAAAGCTAATGCAAGGGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGACGCGCCAAGAGCATTGGTAAAACCATCTCTGTCGCTTGATGAGGAAGAAAGTGCAAAAATAGCATTGTCTTCTGCACCATTATCGGTTTTATTTATGTCATCCTTAAAAGAGGTAGTCGCAGATGATTCGGAAGGATCACCTTCTCGTACTGTAATTAATGCACTTATAAACATGGAACACCTAAAACCTGGATCATGTGAGGTTCTTGCCACTAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCAGTAAGGCAAAGACAGTTCCTGAAGATACACAAAATGTCACAGACTCTGATAGTAGCAAAAAGCTACCAAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTCCAGCTTAA 2088 42.34 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEEDAETPTNGSRAICETSDTVKVSRNVREETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQGAPSRVAESGNWLAASGYASRDISENTRDSYSMGDASEDEELSVSGSGTVVIRSPRGSQASTQFHNESSPSGSAHGYFEDTSFSGTVVMRGHRDDSGSPQTPKSRMGIQERTSSFSPEDSASNLAEAKAAIQAGLKKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALVKPSLSLDEEESAKIALSSAPLSVLFMSSLKEVVADDSEGSPSRTVINALINMEHLKPGSCEVLATKLLQKLASSKESSLKDLQDLATRLFSKAKTVPEDTQNVTDSDSSKKLPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21866751 21879854 - PI0026227.1 Cmetu07g0934 361415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0934 695 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu07g0934 695 MobiDBLite consensus disorder prediction 646 669 - -
Cmetu07g0934 695 MobiDBLite consensus disorder prediction 410 448 - -
Cmetu07g0934 695 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu07g0934 695 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cmetu07g0934 695 MobiDBLite consensus disorder prediction 468 489 - -
Cmetu07g0934 695 MobiDBLite consensus disorder prediction 503 539 - -
Cmetu07g0934 695 Gene3D Transferase(Phosphotransferase) domain 1 12 304 - -
Cmetu07g0934 695 Coils Coil 41 68 - -
Cmetu07g0934 695 SUPERFAMILY Protein kinase-like (PK-like) 13 325 IPR011009 -
Cmetu07g0934 695 FunFam serine/threonine-protein kinase dst1 isoform X1 12 301 - -
Cmetu07g0934 695 MobiDBLite consensus disorder prediction 393 491 - -
Cmetu07g0934 695 CDD STKc_MST3_like 14 287 - -
Cmetu07g0934 695 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu07g0934 695 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 641 - -
Cmetu07g0934 695 MobiDBLite consensus disorder prediction 318 374 - -
Cmetu07g0934 695 MobiDBLite consensus disorder prediction 509 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0934 K08838 - - csv:101214412 1320.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0934 Cmetu-Chr7:21866751 Cmetu09g0153 Cmetu-Chr9:18993542 4.80E-56 dispersed
Cmetu09g1211 Cmetu-Chr9:16393256 Cmetu07g0934 Cmetu-Chr7:21866751 1.80E-08 dispersed
Cmetu07g0934 Cmetu-Chr7:21866751 Cmetu10g0076 Cmetu-Chr10:7068931 6.10E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0934 . 1 693 MAP Kinase Kinase Kinase Kinase AT1G53165 63.1 3.9e-223 771.5
Cmetu10g0076 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.5e-67 253.4
Cmetu07g0934 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 1.7e-231 799.3
Cmetu10g0076 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.6e-67 254.6
Cmetu10g0076 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 1.8e-240 829.3
Cmetu07g0934 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 3.2e-67 253.8
Cmetu09g0153 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 1.5e-251 865.9
Cmetu06g2431 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.1 2.2e-93 340.5
Cmetu06g0753 . 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 4.1e-247 851.3
Cmetu06g0753 . 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 8.6e-247 850.1
Cmetu04g3192 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 2.7e-132 469.5
Cmetu06g0753 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.0 1.0e-118 424.5
Cmetu04g3192 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 2.6e-216 748.8
Cmetu09g0153 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.8e-102 370.2
Cmetu04g3192 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 6.3e-87 318.5
Cmetu06g0753 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.5e-75 278.9
Cmetu06g2431 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 1.0e-140 497.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70579 PF00069 Pkinase 6.40E-68 CL0016 Cmetu PK