Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0964 ATGGATACAGATTGCAATACGGGGCTTCTTCTTGGCCTAGGCAGGGTTTCCGGTGACAATGATTCTCTGCGGTCCGAATTTGATGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGTTTGTTGTCGAGACCGCCACGGAGGAGGGCTGTTCGGGTAGTCCGGTGTCATCGTTTTCAAACTCATCGGGGTTTAAGAGGGAACGTGGTGGCGAAGAGGCGGCGGAGACGGAGGAGTGTATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCGAGGAAGAAACTTAGATTAACAAAACAACAATCCGCCATTTTAGAGGATAATTTCAAAGAACACTCAAGTCTTAGTCCTAAGCAAAAGCAGGATTTGGCTAGGCAATTAAACCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGGCTTCAAAAGGAACTTCAAGAACTTAAATCACTCAAATTAACGCCTCCACCGTTCTGCATGCAACTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGAGCTCCATTTGCGGCGGCGGAAGCAGCGGCGGTGATGCATCTCCGCCCAATAACTTCTCAATTGGGTCAAAGCCTCAATTTCTCAAATTCCCATTTAACCATCCATCGGCGGCTTGTAATTAG 660 47.42 MDTDCNTGLLLGLGRVSGDNDSLRSEFDDDILPSLTLGLSFVVETATEEGCSGSPVSSFSNSSGFKRERGGEEAAETEECMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARLQKELQELKSLKLTPPPFCMQLQAATLTVCPSCESSICGGGSSGGDASPPNNFSIGSKPQFLKFPFNHPSAACN 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23177985 23179607 + PI0018042.1 Cmetu07g0964 361445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0964 219 CDD homeodomain 92 149 IPR001356 GO:0003677
Cmetu07g0964 219 Gene3D - 84 155 - -
Cmetu07g0964 219 MobiDBLite consensus disorder prediction 51 65 - -
Cmetu07g0964 219 MobiDBLite consensus disorder prediction 51 76 - -
Cmetu07g0964 219 Pfam Homeodomain 93 147 IPR001356 GO:0003677
Cmetu07g0964 219 SMART HOX_1 91 153 IPR001356 GO:0003677
Cmetu07g0964 219 SUPERFAMILY Homeodomain-like 89 148 IPR009057 -
Cmetu07g0964 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 145 188 - -
Cmetu07g0964 219 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0964 K09338 - - csv:101212868 330.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0964 Cmetu-Chr7:23177985 Cmetu10g0337 Cmetu-Chr10:7788622 3.90E-20 dispersed
Cmetu07g0964 Cmetu-Chr7:23177985 Cmetu08g0675 Cmetu-Chr8:20520385 1.80E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g591 Blo01g01480 Blo12g01004 Bda01g00604 Bda03g00154 Bpe02g00472 Bpe04g00136 . . . . . Cma09g00321 . . . . . . . . . . . . . . . . . . . Cone4ag1641 . . . Lsi04g01446 Csa04g02512 . . . . . . . . . . Sed13g1841 . Cmo09g00319 . . . Car09g00270 . . Bhi09g03183 Tan01g4653 Cmetu07g0964 . Hepe01g1859 Mch11g0393 . Cla05g01809 Cam05g1931 Cec05g1944 Cco05g2006 Clacu05g1923 Cmu05g1805 Cre05g1931 . . Chy07g00219 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000625 3 3 4 3 4 3 4 3 3 3 3 3 5 4 3 4 3 5 4 3 3 3 3 3 3 3 3 6 4 1 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8238 PF00046 Homeodomain 7.10E-17 CL0123 Cmetu TF