Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g0996 ATGACCGAGCCGGATTCCGATCACCCATCTCCCCTTTTCCCCAAATCTAACCACCGTTCTTCTTCCGACGACCGGACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTTGCTTCTAATCCCATGTCCCCTTTTCTCCTTTCCACCTCCGATCATCTTGCTTCCCCTCTTTGGGCCTTCTCTGAAGCTGATGATGATGATGATTCTAAGTTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTCACATTCTGTACCGCAAAAGCCGACGGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCGTCTTCATCATGGGGAATACTGCCATCAGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCTGACCAGCATGTTCTAGCTCAAGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACTTCCGGGCAACCGTTTGTCCTTGATTCACAGAGCAATGGACTTCATCAATATAGGATGGCCTCTTTGACGTTTATGTTTTCCTTGGACGCCGACCAGGATGGATATCTTGGGCTCCCTGGTCGTGTTTTTCAACAAAAATTGCCAGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCTCGACTTAGTCACGCTCTTAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTTGACCCTTCCGGGCACTCTTGTCTTGGTGTTCTTGAGCTAATCATGACCTCACCAAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTTGAGGCTGTCAATTTAAAAAGTTCAGAGATTTTGGATCATCCGAATAATCAGATTTGCAATGAAGGTCGTCAGAATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCTACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCCGCAACTGAAGTAGCATCCTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCGGGGAGAGCGTTTTTATCTCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGATTGAAGAGTTGTTTTTCGATCTGCTTACGAAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAAAAGAATTTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAACGTTGCTTCAGGAATCAACCTTGAGGACAAGGAAGGACTTGTGGAGATCATTCAAGCATCGAGAAATGGAGGATTTGACTCGAGACTTGAATATATTCAAATTCCGCGACCCGTGGAATTGCCACCTGCATCTGATGCCATGCCAAAAGCAGTAGAGGTAGCTGCATTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCTCCGAAGGAAGAAAGCAATGGTGCTTGGGATGGGGAAAGCCACAAGTCCGTTCCTTGTCCACAGAATAAGGAAGTAAAAAAGACATCCGAAAGGAAGCGTGGAAAGGCAGAGAAATCAATTAGTCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACCATGAAGCGTATCTGTAGGCAACATGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTCAATCGTTCACTTTCAAAGCTAAAGCGTGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTCGGAATATCTTCTCTGGCTACAAGTCCACTTCCTGTTACTGTTAGCTCGAGTTCTCATCCTTTAACTCCAGAAGGGTCTAACCAACAAAACTTTGTTGCTTCTCAACCCTCTGATTCTCAATATAAGGAAACAAACACCTCAGAAGCACAGACAAATGACACACAGGCTAGATTGGAAGATCAATTACATAGAGGAGTGTTGAGTCCAGAAGAACCAATTCACGAACAGAACGGGTTTCTGCCAAAGTTTGGAAATGGTTTGAACAATTTTAGAACAGGGAGTGGATCACGGGAAGAGAGTGCCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGACAGTGCACTTGCAAATAATCCCATTTCTATTCCTCAGCATGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAGCATTCCATCCAATCGATAAACTGAATATATCGGCGCCTGCTTGTTCAATCCCGGATACGCTTGTGATGGTTGAGCCTGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCTAAGGACTTGAAAAATCTTTGTGCTTCTGTCGCCGATGCTGTTCTTGACGAGCAAGTACCCGAATTTTGTTGGTCCAACCCTCATGATATAGCTTTGAGACAACCCATGGACTCTGTTTGTCACACAGTCCCTCATATATCACTAAGGCAAGAACCAAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGATTTCGAATTCCTTTGAGTTCTGGTATTGTGGAGTTGAGAGAAGAAGTGGCAAAGAGACTGAAATTGGAGGTTGGTACGTTCGATATCAAATATATGGATGATGATCGCGAATGGGTTCTTATTGTGTGTGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAGTCGTCAGGTAGCAATATCATAAGATTGTCAGTTCATGATTTAAATGTCAATCTTGGGAGTTCTTGTGAGAGTACTGGAGAGTGA 2979 43.87 MTEPDSDHPSPLFPKSNHRSSSDDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLLSTSDHLASPLWAFSEADDDDDSKFAAYACSVLGTSNSHSVPQKPTENQKFKILPVPSSSWGILPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLDADQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGRAFLSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKNLLGALMATMKKHFYTLNVASGINLEDKEGLVEIIQASRNGGFDSRLEYIQIPRPVELPPASDAMPKAVEVAALETLQQQSLMVHDAPKEESNGAWDGESHKSVPCPQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDSQYKETNTSEAQTNDTQARLEDQLHRGVLSPEEPIHEQNGFLPKFGNGLNNFRTGSGSREESAGTPTSHGSCQGSPANDSALANNPISIPQHEQCVRRESPEVAFHPIDKLNISAPACSIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWSNPHDIALRQPMDSVCHTVPHISLRQEPRRMTIKATYKEDIIRFRIPLSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIVCDADLQECVDISKSSGSNIIRLSVHDLNVNLGSSCESTGE 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5613901 5618482 + PI0023161.1 Cmetu07g0996 361477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g0996 992 MobiDBLite consensus disorder prediction 570 590 - -
Cmetu07g0996 992 SMART PB1_new 897 979 IPR000270 GO:0005515
Cmetu07g0996 992 MobiDBLite consensus disorder prediction 730 784 - -
Cmetu07g0996 992 MobiDBLite consensus disorder prediction 1 27 - -
Cmetu07g0996 992 PANTHER PROTEIN NLP8 63 991 IPR045012 GO:0003700
Cmetu07g0996 992 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Cmetu07g0996 992 FunFam RWP-RK domain-containing protein 894 978 - -
Cmetu07g0996 992 MobiDBLite consensus disorder prediction 673 715 - -
Cmetu07g0996 992 ProSiteProfiles PB1 domain profile. 897 979 IPR000270 GO:0005515
Cmetu07g0996 992 MobiDBLite consensus disorder prediction 748 784 - -
Cmetu07g0996 992 SUPERFAMILY CAD & PB1 domains 891 979 - -
Cmetu07g0996 992 Pfam RWP-RK domain 592 640 IPR003035 -
Cmetu07g0996 992 MobiDBLite consensus disorder prediction 552 590 - -
Cmetu07g0996 992 CDD PB1_NLP 898 978 IPR034891 -
Cmetu07g0996 992 Gene3D - 895 978 - -
Cmetu07g0996 992 Pfam PB1 domain 898 978 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g0996 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0208 Cmetu-Chr7:24436172 Cmetu07g0996 Cmetu-Chr7:5613901 5.10E-114 dispersed
Cmetu07g0313 Cmetu-Chr7:2138112 Cmetu07g0996 Cmetu-Chr7:5613901 4.00E-120 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0996 . 186 992 NLP Transcription Factor Family AT1G64530 51.9 7.1e-217 750.7
Cmetu07g0996 . 265 992 NLP Transcription Factor Family AT4G24020 54.8 9.2e-201 697.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8243 PF00564 PB1 4.90E-19 CL0072 Cmetu TF