Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1074 ATGTCTCTTCGCCGATCCTTTCTCTCTCGGAGGTTCTCTTCCAAGTCTTCTTCTAGAGGAGATCTCAATGCTCTTTCCGGAATTCTTCCTCTCTCCGCCTCCGACTTTGATCATGCCTCCTCTCTCTCCGGAGCCTCTCATCCTCAATCCTCTTGGTCTTCCATGCTTCCCGAGCTTCTTCGGGAGATCATTCAGCGGGTTGAGGCTGAAGAACATGGTTGGCCTAATCGCCAGAACGTTGTTTCTTGCGCTTGTGTTTGTAAACGTTGGCGGGATATTACTAAAGAGGTCGCCAGGGCCACACCTCATTCCGGAAAAATTACTTTCCCTTCTTGTCTCAAACAGCCTGGACCAAGTGATTTTCCACATCAGTGTCTTATTAAAAGGAACAAGAAGACTTCAACATTTTTCCTTTATCTTGCCCTTACACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCCGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCCCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACAAATTTTACCATTTATGACAGCCAACCACCACATAACGGTGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGGTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCAGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGAGAATGATATGCTCTCTAAAGTCCCCAGTATCAGAAGACAATGGAAGCAAACCTTGTGAGAACTCGAAGATGAAATCCGAGTCCCTTTCTTCCTCATCTGGGTTGACAATCTTAAGAAACAAGGCACCTAGGTGGCACGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTTACAGTAGCATCTGTTAAGAACTTTCAACTTGTTGCTACTGTTGACCATACCCAGCCAGGAGGTAAAGGGGACGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGATGATACATTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCATTCGCCATTTGCCTTACGAGCTTTGGCACTAAGCTGGCGTGCGAATAG 1140 45.44 MSLRRSFLSRRFSSKSSSRGDLNALSGILPLSASDFDHASSLSGASHPQSSWSSMLPELLREIIQRVEAEEHGWPNRQNVVSCACVCKRWRDITKEVARATPHSGKITFPSCLKQPGPSDFPHQCLIKRNKKTSTFFLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKSPVSEDNGSKPCENSKMKSESLSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHTQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7074878 7078978 + PI0026007.1 Cmetu07g1074 361555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1074 379 Gene3D Tubby Protein; Chain A 108 379 IPR025659 -
Cmetu07g1074 379 PANTHER TUBBY-RELATED 44 377 - -
Cmetu07g1074 379 MobiDBLite consensus disorder prediction 260 278 - -
Cmetu07g1074 379 Pfam F-box domain 52 96 IPR001810 GO:0005515
Cmetu07g1074 379 SUPERFAMILY Tubby C-terminal domain-like 103 379 IPR025659 -
Cmetu07g1074 379 PRINTS Tubby superfamily signature 289 306 IPR000007 -
Cmetu07g1074 379 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Cmetu07g1074 379 PRINTS Tubby superfamily signature 336 355 IPR000007 -
Cmetu07g1074 379 PRINTS Tubby superfamily signature 357 379 IPR000007 -
Cmetu07g1074 379 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Cmetu07g1074 379 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Cmetu07g1074 379 PRINTS Tubby superfamily signature 307 323 IPR000007 -
Cmetu07g1074 379 CDD F-box_AtTLP-like 52 96 - -
Cmetu07g1074 379 Gene3D - 45 98 - -
Cmetu07g1074 379 MobiDBLite consensus disorder prediction 258 278 - -
Cmetu07g1074 379 MobiDBLite consensus disorder prediction 201 221 - -
Cmetu07g1074 379 Pfam Tub family 113 374 IPR000007 -
Cmetu07g1074 379 ProSitePatterns Tub family signature 1. 307 320 IPR018066 -
Cmetu07g1074 379 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Cmetu07g1074 379 ProSitePatterns Tub family signature 2. 364 379 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1074 K19600 - - csv:101211968 702.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1074 Cmetu-Chr7:7074878 Cmetu11g1152 Cmetu-Chr11:4425515 7.60E-104 dispersed
Cmetu03g0268 Cmetu-Chr3:20720726 Cmetu07g1074 Cmetu-Chr7:7074878 6.60E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT1G76900 73.4 1.9e-178 622.5
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 1.6e-169 592.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT1G76900 69.3 6.2e-169 590.9
Cmetu11g1152 . 13 386 TUB Transcription Factor Family AT1G76900 50.6 4.4e-114 408.7
Cmetu06g0547 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.6e-102 367.1
Cmetu03g0268 . 173 430 TUB Transcription Factor Family AT1G25280 69.4 4.6e-95 344.7
Cmetu03g0406 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.1e-93 340.1
Cmetu06g1321 . 214 447 TUB Transcription Factor Family AT1G25280 53.9 1.0e-70 263.8
Cmetu07g1219 . 177 414 TUB Transcription Factor Family AT1G25280 55.8 3.0e-70 262.3
Cmetu04g0475 . 180 411 TUB Transcription Factor Family AT1G25280 53.4 6.2e-68 254.6
Cmetu11g1152 . 154 386 TUB Transcription Factor Family AT1G25280 53.6 5.2e-67 251.5
Cmetu08g0022 . 176 414 TUB Transcription Factor Family AT1G25280 51.7 1.2e-63 240.4
Cmetu11g1152 . 98 386 TUB Transcription Factor Family AT5G18680 62.8 5.8e-99 357.8
Cmetu06g1321 . 158 447 TUB Transcription Factor Family AT5G18680 62.8 3.2e-97 352.1
Cmetu03g0268 . 112 430 TUB Transcription Factor Family AT5G18680 53.4 2.8e-85 312.4
Cmetu03g0406 . 112 432 TUB Transcription Factor Family AT5G18680 51.8 3.4e-83 305.4
Cmetu06g0547 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.3e-82 303.5
Cmetu07g1219 . 115 414 TUB Transcription Factor Family AT5G18680 52.5 3.0e-79 292.4
Cmetu07g1219 . 1 414 TUB Transcription Factor Family AT2G18280 61.9 3.5e-144 508.4
Cmetu08g0022 . 1 414 TUB Transcription Factor Family AT2G18280 59.8 1.1e-134 476.9
Cmetu04g0475 . 1 411 TUB Transcription Factor Family AT2G18280 60.2 6.6e-127 451.1
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 3.0e-119 425.6
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT2G18280 52.3 8.1e-117 417.5
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT2G18280 54.3 1.4e-116 416.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.2e-112 403.7
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT2G18280 52.7 1.8e-111 399.8
Cmetu07g1074 . 48 379 TUB Transcription Factor Family AT2G18280 50.7 3.0e-95 345.9
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT2G47900 68.5 1.6e-160 562.8
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT2G47900 67.7 9.8e-158 553.5
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT2G47900 55.7 1.9e-132 469.5
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 1.0e-130 463.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 1.7e-130 463.0
Cmetu07g1219 . 1 414 TUB Transcription Factor Family AT2G47900 56.4 1.0e-122 437.2
Cmetu04g0475 . 10 411 TUB Transcription Factor Family AT2G47900 55.5 1.9e-116 416.4
Cmetu08g0022 . 1 414 TUB Transcription Factor Family AT2G47900 51.3 9.6e-113 404.1
Cmetu07g1074 . 49 379 TUB Transcription Factor Family AT2G47900 51.0 8.5e-101 364.4
Cmetu01g1579 . 82 297 TUB Transcription Factor Family AT1G16070 63.2 7.5e-75 277.7
Cmetu03g0268 . 67 430 TUB Transcription Factor Family AT1G43640 70.6 8.2e-148 520.4
Cmetu06g0547 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.0e-145 513.5
Cmetu03g0406 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 1.5e-141 499.6
Cmetu06g1321 . 109 447 TUB Transcription Factor Family AT1G43640 53.4 2.3e-105 379.4
Cmetu11g1152 . 47 386 TUB Transcription Factor Family AT1G43640 51.9 2.3e-105 379.4
Cmetu04g0475 . 69 411 TUB Transcription Factor Family AT1G43640 50.5 2.4e-99 359.4
Cmetu08g0022 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 4.0e-94 342.0
Cmetu04g0475 . 34 411 TUB Transcription Factor Family AT1G47270 63.1 1.2e-133 473.4
Cmetu07g1219 . 34 414 TUB Transcription Factor Family AT1G47270 58.0 1.3e-122 436.8
Cmetu08g0022 . 33 414 TUB Transcription Factor Family AT1G47270 56.6 2.7e-120 429.1
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.7e-114 409.8
Cmetu03g0268 . 30 430 TUB Transcription Factor Family AT1G47270 51.7 2.0e-112 402.9
Cmetu03g0406 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 3.5e-112 402.1
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT1G47270 51.0 3.1e-108 389.0
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT1G47270 50.2 2.7e-104 375.9
Cmetu07g1074 . 1 379 TUB Transcription Factor Family AT1G53320 71.1 3.3e-155 545.0
Cmetu07g1219 . 20 414 TUB Transcription Factor Family AT1G53320 50.9 4.9e-103 371.7
Cmetu11g1152 . 22 386 TUB Transcription Factor Family AT1G53320 50.4 4.9e-103 371.7
Cmetu06g1321 . 158 447 TUB Transcription Factor Family AT3G06380 63.8 3.1e-97 352.1
Cmetu11g1152 . 98 386 TUB Transcription Factor Family AT3G06380 62.1 1.4e-94 343.2
Cmetu06g0547 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 6.2e-82 301.2
Cmetu03g0268 . 116 430 TUB Transcription Factor Family AT3G06380 51.6 9.0e-81 297.4
Cmetu03g0406 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 2.6e-80 295.8
Cmetu07g1219 . 119 414 TUB Transcription Factor Family AT3G06380 54.1 4.5e-80 295.0
Cmetu04g0475 . 120 411 TUB Transcription Factor Family AT3G06380 51.8 4.2e-78 288.5
Cmetu08g0022 . 118 414 TUB Transcription Factor Family AT3G06380 50.2 9.6e-75 277.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013611 0 1 1 1 1 0 2 0 0 0 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8250 PF01167 Tub 9.60E-103 CL0395 Cmetu TF