Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1239 ATGGCGGCTAATTCACCGGTCCAAGATCCTCCCACGGATGCTTCTGCTAAACAATCTGCTCCTTCTCCCTCCCCCGCTCTTGTGACCCCTCCCCTTAAAATCGAGACTCCTCCCTCCGACTCCGGTCAGACCCCCTCCGCCGTCCCCGCTCCCACCCCTCGCCCCGAGGACCTCCCTCAATCCACTTTTCCGGATCCAATTCATCTTCCCAGCTATTCCAGATGGTTCTCCTGGAACGGCATTCACGAGTGCGAGGTTCGCTTCCTTCCGGAGTTCTTTGATTCACGGTCGCCCTCTAAAAACCCTAGGGTTTACAAGTACCTTCGAAATTCTATTGTCAAGAATTTTAGGGAATGCCCTTCCAAGAAGATCACCTTTACTGATATCCGAAAGACACTCGTTGCCGATGTAGGATCCATTCGTAGGGTTTTCGATTTCCTCGAGGCGTGGGGTCTTATCAATTACTCGCCGTCCGCGCTGAGCAAACCCCTGAAGTGGGAGGACCGGGACTCCAAGTCTAATGCGTCCGCTTCGAACACCAACGAACCTGGAGGTGGGTCCGCGAATTCCTCGGCTTCTAAAGACGCTTCTAAGAGAGTATGCAGCGGTTGCAAATCTATTTGTAGCATTGCTTGCTTTGCTTGCGATAAGTTTGACTTGACACTTTGTGCAAGGTGCTATGTTCGTGGAAACTATCGAGTTGGTGTTATTTCTTCAGATTTTCGACGTGTTGAGATCAATGATGATGCACGAACAGATTGGACCGATAAGGAGACTTTGCATCTTCTTGAAGCTTTGACGCATTATGGTGATGACTGGAAAAAGGTTGCACAACATGTTGGTGGCAGAACTGAGAGGGAATGTGTCGCCCATTTTGTGAAGCTTCCTTTAGGGGAGCAGTTTCATGGTTATCCAGATTCTGGACATATTGACAACAATTATACTGTGGTGAAGGATCATGCCAGTGCCAATCTTACGTTGGAAAGTACTGGCGCATCTATTCCTAATAAAAGAATCCGTCTATCACCCCTGGCAGATGCAAGTAATCCCATAATGGCTCAGGCTGCCTTTCTGTCGTCTTTGGTGGGTGTTGAGGTTGCAGAAGCAGCTGCCCAGGCAGCTGTGATTAAACTTTCTGAGATGGACTTTGGAGGAGATGGGGAAATTGCCAGACCTGTCGCTAGGAATATAGGAGAGCAAGGAAACGACGTTGCATCCTGTGAAGGCAGCTTGTTAAGGGGGTCTTCGATGGATATGGAGAAAGCAATATCTCATATTGTAGACGTTCAGATGAAAGAGATAGTAGATAAGCTTAATGGTTTCGAGGAGGAAGAGTTGCAGATGGAGAAGGTATTTAAGCAATTAGACCAAATGAAAAGCATGCTTTTCGTTGATCAACTAAATCTCTTATTCAATAAAAGGTGTATTCCTACTGTCGAAGACAAGAGCAATATGAATGTAAGAACGTGA 1470 47.35 MAANSPVQDPPTDASAKQSAPSPSPALVTPPLKIETPPSDSGQTPSAVPAPTPRPEDLPQSTFPDPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECPSKKITFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWEDRDSKSNASASNTNEPGGGSANSSASKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVISSDFRRVEINDDARTDWTDKETLHLLEALTHYGDDWKKVAQHVGGRTERECVAHFVKLPLGEQFHGYPDSGHIDNNYTVVKDHASANLTLESTGASIPNKRIRLSPLADASNPIMAQAAFLSSLVGVEVAEAAAQAAVIKLSEMDFGGDGEIARPVARNIGEQGNDVASCEGSLLRGSSMDMEKAISHIVDVQMKEIVDKLNGFEEEELQMEKVFKQLDQMKSMLFVDQLNLLFNKRCIPTVEDKSNMNVRT 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24631394 24636938 + PI0015936.1 Cmetu07g1239 361720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1239 489 FunFam SWI/SNF complex subunit SMARCC2 isoform C 249 300 - -
Cmetu07g1239 489 SUPERFAMILY Homeodomain-like 66 169 IPR009057 -
Cmetu07g1239 489 SUPERFAMILY Homeodomain-like 251 302 IPR009057 -
Cmetu07g1239 489 ProSiteProfiles SWIRM domain profile. 67 164 IPR007526 GO:0005515
Cmetu07g1239 489 SMART sant 250 298 IPR001005 -
Cmetu07g1239 489 MobiDBLite consensus disorder prediction 173 194 - -
Cmetu07g1239 489 Coils Coil 441 461 - -
Cmetu07g1239 489 Gene3D - 73 158 IPR036388 -
Cmetu07g1239 489 PANTHER SWI/SNF COMPLEX-RELATED 25 466 - -
Cmetu07g1239 489 MobiDBLite consensus disorder prediction 1 63 - -
Cmetu07g1239 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 288 IPR017930 -
Cmetu07g1239 489 MobiDBLite consensus disorder prediction 171 194 - -
Cmetu07g1239 489 CDD SANT 254 295 IPR001005 -
Cmetu07g1239 489 MobiDBLite consensus disorder prediction 1 23 - -
Cmetu07g1239 489 Pfam Myb-like DNA-binding domain 252 295 IPR001005 -
Cmetu07g1239 489 FunFam SWI/SNF complex subunit SMARCC2 isoform c 73 159 - -
Cmetu07g1239 489 Pfam SWIRM domain 70 155 IPR007526 GO:0005515
Cmetu07g1239 489 Gene3D - 250 299 - -
Cmetu07g1239 489 ProSiteProfiles Myb-like domain profile. 251 296 IPR001005 -
Cmetu07g1239 489 ProSiteProfiles SANT domain profile. 249 300 IPR017884 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1239 K11649 - - csv:101219016 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0979 Cmetu-Chr2:25031332 Cmetu07g1239 Cmetu-Chr7:24631394 9.80E-39 dispersed
Cmetu07g1239 Cmetu-Chr7:24631394 Cmetu07g1927 Cmetu-Chr7:19906004 4.50E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28