Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1308 ATGAGAACTCAAAACCCTCTAATGGCAATTTTCTCTGCCACTTCAATGTTCCTCTTCTTCCTAACACATGCCCAAAACTCCCCTCAAGACTACATTTCCCTACACAACAGAGCTCGGGCGAGCGTTGGTGTTGGTCCCATGATATGGAACAACACTGTCGCTGCCTATGCTCGAGCCTACGCCAACCTAAGGAGAAATGACTGTGCCTTGGTTCACTCTAGCGGACCATTGTTCACCGGTGCGGATGGCGTAAAGTTGTGGGTGGCAGAAAAGCATTTATACGACTATGCATCGAACTCATGCAAGGGTGGTGAGTGTGGACACTATACTCAGGTGGTGTGGCGAACCTCTGTGCATCTTGGATGTGCAAGAGTGGCTTGTATGGGCAAATCCCAGTTCGTTGTATGCAACTATGATCCAGCTGGCAACTATATAGGATTAAGACCCTATAATTCTTCAATCTAA 465 47.53 MRTQNPLMAIFSATSMFLFFLTHAQNSPQDYISLHNRARASVGVGPMIWNNTVAAYARAYANLRRNDCALVHSSGPLFTGADGVKLWVAEKHLYDYASNSCKGGECGHYTQVVWRTSVHLGCARVACMGKSQFVVCNYDPAGNYIGLRPYNSSI 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 202149 202904 + PI0010663.1 Cmetu07g1308 361789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1308 154 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 30 147 IPR001283 -
Cmetu07g1308 154 FunFam CAP, cysteine-rich secretory protein, antigen 5 25 150 - -
Cmetu07g1308 154 Pfam Cysteine-rich secretory protein family 74 138 IPR014044 -
Cmetu07g1308 154 PRINTS Allergen V5/Tpx-1 family signature 83 96 IPR001283 -
Cmetu07g1308 154 PRINTS Allergen V5/Tpx-1 family signature 106 122 IPR001283 -
Cmetu07g1308 154 PRINTS Allergen V5/Tpx-1 family signature 133 146 IPR001283 -
Cmetu07g1308 154 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cmetu07g1308 154 CDD CAP_PR-1 28 150 - -
Cmetu07g1308 154 SMART SCP_3 26 146 IPR014044 -
Cmetu07g1308 154 ProSitePatterns CRISP family signature 1. 107 117 IPR018244 GO:0005576
Cmetu07g1308 154 ProSitePatterns CRISP family signature 2. 133 144 IPR018244 GO:0005576
Cmetu07g1308 154 SUPERFAMILY PR-1-like 26 151 IPR035940 -
Cmetu07g1308 154 Gene3D CAP 25 150 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1308 K13449 - - csv:105436021 260.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2484 Cmetu-Chr1:1190669 Cmetu07g1308 Cmetu-Chr7:202149 4.30E-31 dispersed
Cmetu01g2721 Cmetu-Chr1:1186912 Cmetu07g1308 Cmetu-Chr7:202149 2.40E-37 dispersed
Cmetu07g1308 Cmetu-Chr7:202149 Cmetu08g0085 Cmetu-Chr8:16436366 4.00E-27 dispersed
Cmetu01g2163 Cmetu-Chr1:1170992 Cmetu07g1308 Cmetu-Chr7:202149 1.30E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001430 0 2 0 0 0 2 0 1 1 3 2 2 18 1 1 16 2 0 9 2 2 0 1 1 2 2 0 2 1 0 73