Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1332 ATGAGTCCAGCAAATTGTTTTTGGACAATATTCAAGCAACGGAAGGTGAAACGTGTTACAAGCAATGGTGAACAGGTACATGTAAAGACGGGAAAATCCAATGGTTTCCCTCATGGAAAGAGTGAAGATCTAGCTGCAACTCGAATTCAAAATGCATTTCGTGCATTTACGGCTAGAAAGGACGTGCATAGTTCGAAAGTGCCAGAGAGATGCCAGGATCTAGTTCAAGGTGAAACGGCTACAAAACAAGTGTCAATCTTCATCCATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCACGTAGACTCTGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGGCAGAATGGTGCGGTGGGTCAGAAACAAAAGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTAAGACGGGAGCGGGCTATGGCTTATGCATTCTCTCATCAGTGGAGGGCCAATTCCATCTTAGATCTGAGCCCGGCTTCGTACAGTCTTGACAAAGAAAACTGGGGATGGAGCTGGAAGGAGAGATGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATACTCATCTCACCATTCCAAAGAAGGTGCCGATGAAACAAACAAGCAAAGTCAATAAAGTGACATATCAATCGGGGTTGAAGGTCTCAAACTTAGCTGGACATTCTTCGTTGAACAGCAAGGGCAGTTCAAAGGCCAAAAATTCTGCTATATCCAACTGCTGA 786 44.15 MSPANCFWTIFKQRKVKRVTSNGEQVHVKTGKSNGFPHGKSEDLAATRIQNAFRAFTARKDVHSSKVPERCQDLVQGETATKQVSIFIHSWSRMQQEIRARRLCMVTEYRVKQKKLENQLKLEAKIHELEAEWCGGSETKEEILFKIQQREEAAVRRERAMAYAFSHQWRANSILDLSPASYSLDKENWGWSWKERWIAARPWEIRANTHLTIPKKVPMKQTSKVNKVTYQSGLKVSNLAGHSSLNSKGSSKAKNSAISNC 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7810911 7815944 - PI0006405.3 Cmetu07g1332 361813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1332 261 ProSiteProfiles IQ motif profile. 42 70 IPR000048 GO:0005515
Cmetu07g1332 261 Coils Coil 112 132 - -
Cmetu07g1332 261 PANTHER IQ-DOMAIN 5-RELATED 30 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1332 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0228 Cmetu-Chr4:1795860 Cmetu07g1332 Cmetu-Chr7:7810911 3.60E-48 dispersed
Cmetu07g1332 Cmetu-Chr7:7810911 Cmetu10g0768 Cmetu-Chr10:21758214 4.00E-27 dispersed
Cmetu07g1332 Cmetu-Chr7:7810911 Cmetu07g0147 Cmetu-Chr7:23379390 9.80E-18 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0768 . 112 281 IQD Protein Family AT3G09710 58.2 7.1e-51 198.7
Cmetu09g0362 . 1 470 IQD Protein Family AT3G52290 53.3 3.8e-99 359.0
Cmetu02g0865 . 1 408 IQD Protein Family AT3G22190 57.1 2.2e-96 349.7
Cmetu07g0147 . 1 438 IQD Protein Family AT2G26180 60.2 2.3e-117 419.5
Cmetu07g1332 . 40 216 IQD Protein Family AT2G33990 55.0 5.4e-48 188.3
Cmetu07g1332 . 43 216 IQD Protein Family AT3G15050 63.3 9.0e-56 214.2
Cmetu11g0481 . 1 511 IQD Protein Family AT4G00820 50.6 5.9e-110 395.2
Cmetu06g1191 . 1 467 IQD Protein Family AT4G00820 50.3 6.9e-103 371.7
Cmetu02g1708 . 1 375 IQD Protein Family AT3G16490 50.1 1.9e-62 236.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30