Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1354 ATGAACATTTTCAAAGCTTTCAGATTCTTTTTGCTTCCTTTAATTTTGATATTTTCAGGGAAATTTATTATTACCATCCAAGCTGGTGTCTCCTATGATTATTCTGCCACAACTCAGTGTTTGACAAAGCCAAGAAGGGTTCATGATGGGGGAGGGATAATAGTGAATCCAGAGTTCAACAATGGAATTGAAGGTTGGAAAGTGTTTGGAGGAGGAAAAATAAAGGAAGGATGGTTGAAACATGGGAATCACATCAATACCTTCATTGTAGCTCACAATAGGACTTTCCCAAGGGATACTTTTCATCAATTGCTTCACCTCCAACATCATTACCTCTATACTTTCTCTGCTTGGGTTCGATTAAGCGAGGGAAATGCACCTGTGGCTGTTGTATTCAGAAATAGTAAAGGGGGTCAGATTCTTCATGGTGGTGAAACCATGGCCAAACATGGATGCTGGAGTTTGCTCAAAGGTGGCATCGTCTCTAATTTTACAGGCCAAGCTGAGGTTATTTTTGAGAGTACAAATACAGCAGTGGAAATCTGGGTTGATAATGTCTCACTACACCCATTTACAAAGGAGCAATGGCGATCCCACCAAGATGAAAGCATTAACAAGGTGAGGAAAAGCAAGGCGAGGTTGCAAATAACTCAAGCAGACAACAGTAAACTAGCAGGTGGAAAAGTCCTCATTGACCAGAAAAAACCAAACTTCCCATTTGGGGCAGGAATGAACTACCACATTCTCCTTAGTAAAGAATACCAACAGTGGTTTGCATCAAGATTTGCCTATGCCACATTCACCAATGAACTTAAGTGGTATAGCACTGAGAAAGTACAAGGCCAAGAGAACTACACCATCCCTGATGCAATGCTTGAGTTTTCCCAACAACATGGTATTTCAGTAAGAGGACACAACATTTTCTGGGACAATCCAAAATTCCAGCCAGAATGGGTCAAGTCACTCTCCCCTCGAGATTTAAAGGAAGCAGCCGATAGAAGAATCAATTCCGTGGTTAAGAGATATTCTGGAAAGTTTATCCATTGGGACGTCGTGAACGAAAACGTGCACTTCAGATTCTTTGAGGACAAACTCGGTAAAAATGCCTCTGCAGAGTACTTCAACATAGCACATAAACTTGACAACAAAACACTTCTTTTCATGAATGAATACAATACCATGGAACACGATTACGAAAAGACATCAACCCCAGCTAACTTCAGAAAGAAACTCCTCGAAATCCTGTCGTATCCCGGGAATGAAAACATCCCAGCAGGAATCGGCTTGCAGGGCAACTTCGGCCCTGCTGCACCCAACCTGCCATACATGAGATCCGCTTTGGACCTTCTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTTTGTTCACAAAACTCCAAATCAGGCACAATACTACGAGGAAGTTCTAAGAGAAGGGTACTCACATCCTGCAGTGAAGGGGATAATCACATTTGGTGGCCCAGAATCCGCAGGTTTCACTACTCTGCCGCTTGTGGATATGAATTTCAAGAACACACCAGCGGGAGATGTTGTGGATAAGCTTTTGGGTGAATGGAAAACACCCAGCTTTGAAATTACAGCCGATGATGAAGGTTTTGTTGATGCTTGGTTGTTCCATGGAGATTACAATGTGAGGGTGCAACACCCTCGAACCAATTCCTCCATTTCTGTGAGTATCAAAGTGACTGAAGAGGCCGCTCATCGAACCTTGAATCTCCAACTCCCTCATAATTGA 1761 42.76 MNIFKAFRFFLLPLILIFSGKFIITIQAGVSYDYSATTQCLTKPRRVHDGGGIIVNPEFNNGIEGWKVFGGGKIKEGWLKHGNHINTFIVAHNRTFPRDTFHQLLHLQHHYLYTFSAWVRLSEGNAPVAVVFRNSKGGQILHGGETMAKHGCWSLLKGGIVSNFTGQAEVIFESTNTAVEIWVDNVSLHPFTKEQWRSHQDESINKVRKSKARLQITQADNSKLAGGKVLIDQKKPNFPFGAGMNYHILLSKEYQQWFASRFAYATFTNELKWYSTEKVQGQENYTIPDAMLEFSQQHGISVRGHNIFWDNPKFQPEWVKSLSPRDLKEAADRRINSVVKRYSGKFIHWDVVNENVHFRFFEDKLGKNASAEYFNIAHKLDNKTLLFMNEYNTMEHDYEKTSTPANFRKKLLEILSYPGNENIPAGIGLQGNFGPAAPNLPYMRSALDLLGSTGYPIWITEVFVHKTPNQAQYYEEVLREGYSHPAVKGIITFGGPESAGFTTLPLVDMNFKNTPAGDVVDKLLGEWKTPSFEITADDEGFVDAWLFHGDYNVRVQHPRTNSSISVSIKVTEEAAHRTLNLQLPHN 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 388599 392362 - PI0019509.1 Cmetu07g1354 361835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1354 586 SMART glyco_10 271 524 IPR001000 GO:0004553|GO:0005975
Cmetu07g1354 586 Gene3D Glycosidases 228 533 - -
Cmetu07g1354 586 SUPERFAMILY (Trans)glycosidases 225 530 IPR017853 -
Cmetu07g1354 586 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 224 523 IPR001000 GO:0004553|GO:0005975
Cmetu07g1354 586 Gene3D - 42 191 - -
Cmetu07g1354 586 Pfam Glycosyl hydrolase family 10 234 494 IPR001000 GO:0004553|GO:0005975
Cmetu07g1354 586 PANTHER GLYCOSYL HYDROLASE 30 573 IPR044846 GO:0004553|GO:0005975
Cmetu07g1354 586 SUPERFAMILY Galactose-binding domain-like 52 190 IPR008979 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1354 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g1970 Cmetu-Chr11:28453703 Cmetu07g1354 Cmetu-Chr7:388599 1.10E-100 transposed
Cmetu01g2138 Cmetu-Chr1:1029677 Cmetu07g1354 Cmetu-Chr7:388599 2.50E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1030 Cone10ag1047 Lsi03g00578 . . . . . . . . . . . Sed07g1258 Cmo04g00478 . . . . . . Cpe01g00400 Bhi11g01130 Tan01g0624 Cmetu07g1354 . Hepe07g0408 Mch10g0421 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60