Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1520 ATGGGCGAGGTTTCTAAATCGACGATGAAGAAGAAGAAGAAAAAGGGTCGCCCTTCTCTTTTAGATCTCCAAAAGCGCTTCCTCAAACAGCAAAAGTTGCAGGAACAGCATCAAGAACCGCTTAATCCTTTCGACTTTGCCTCCAACCCTAGGAACCCATCTCCTTGTCGGAATCCCAATGTTCACCCCGCAACAGAGCAAGTCCCCATCGCCGCCGCCGACGACGACGACGAGCGCATTGAGAAGAAGCATAAGCCCTTACTCGGTTTAACTTCTCGTCAAAACTATCCAACATTGTCCGGTTATTCTTTGCGTAAATCGGCCTCCTACGGCGAAGAGTCCGAGACGGCCCTCAAGCGTCGCAGAACCGGCGCCGCCCAGTTTGGATCTTCTCAAGTGAGAGAAGATAAAGCTTTGAAAGCGACTGACACTGCACATGGGTCGCAGGTGGAGTCTGGTCCCACGACAACTTTGCCAGACAAAAAGTTGTTGATTTTCATCCTTGATAGGCTTCAAAAAAAAGACACCCATGGAGTATTTTCCGAACCCGTGGATCCAAACGATCTTCCCGATTACCATGTCATTATTCAAACTCCTATGGATTTTGGGACCGTGAGAACGAAATTAGATGGAGGAGCTTACGCAAATTTGGAACAGTTTGAAGAAGACATTTTTTTGATATGTTCGAATGCAATGAAGTATAATGCTTCTGATACTGTTTTCTTCCGTCAGGCACGATCAATACAAGAACTTGCAAAGAAGGATTTTGAGAATTTGAGGCGAGAGAGCAGCGATGAAAGTGAACCAGAACAGAAAGTTGTGAGGAGAGGTAGGCCACCAGGGAAGAGCCTGAAGAAATCATTAGGTCTCGGTAACCCTATTGAAAGTAATGGAGCAGAGTTCTGCTCAGGTGCTACTCTTGCTTCTGGATGTGATGATTCCTACAATGTCAATGGTTACAATTTGAGAAGAGCACGTTCCACCTTCAGGTCCCTGCCTGCAGATCCTCTAGCAAGAACATCTACAGCTCAAGCTCAACATGGCGAAACTTTGGCCAGCTGGTTACCTGAATGGAAAAATGAGTTTCCAGCTTCAGTTTTAAAAGGTGTTCTTAAAAGTGGAAAGAATGATAATATGGCTGTGAATGAGAATAGACGTGATACCTATAATCGTTCCATGTCATGTGGGAATTGGCCATCTGTCTTTGGTGACCTTGATGGAGACTTGAAGCAACTAATTACTGTGGGTTTGCATGCCGAGCATGGTTATGCAAGAAGCTTAGCTCTCTTTGCAGCCGATCTTGGTCCTGCAGTTTGGAATATTGCTTTAAAGAAAATCGAAAGTATTAGTCGGGAGCTGGGGCGTGTATTAATACAAGAAATTGAAATGCTACAGCATCATCGTTTGTTGCCTCTGGATGGAGGCTCATCCGACATGAAAGCAGTGGCAGAAACCACGGCTGTTCTTCCATGTAGAAGCATATCTGGCTCTAACATTGGTGTTTCAAATAATTTTTTGAAACTCAGCGAAGATGCTGATAATGAAATTGATAGAGTGAGAAATTCTGAAAGCGAGACAGTGTTGCTAGACAGAAGTAGAGATGTAATAGGATCGACAACTTGTATACCGAATGAGCAGAACATAATAGTTCCTTCAAACATCCACCCAACAAATGGTAATCTTTTCCCCCATTTTTCTCAAGAAATGAGAATGGTAAGACTTGATTCTATTCTTGGTGGGACGTCTTGTTCAGACTACTCTCCCTGCCCAGCTCTCAACAATGCTTCTTTCCAAATCCCTTCCAGTTCAGATAATACGGATTTGTTAAACCAAGCAGGAATGCCAAAACTTGCAGAAGAAGTTGCCTCTCAGTCACATGCTCTGCGGCATTCACCAGCCCGTGTCTACTTTCAGGACTCAGTCGATCCGCAACAAGACAAGCATAGTGAAAAGGCACATTGGCAAGAATTATCAACACGTCCTGTGCTAGATTCAATCGCCTTCAATCCCGACCTTAATTTTGGATTAGGCTTATCTGCTGCACCCAGTTCTAATCTGCAGATTCTTTCTCAAATTCAACCCGATTTAGTATTGCAGCTGTGA 2103 44.27 MGEVSKSTMKKKKKKGRPSLLDLQKRFLKQQKLQEQHQEPLNPFDFASNPRNPSPCRNPNVHPATEQVPIAAADDDDERIEKKHKPLLGLTSRQNYPTLSGYSLRKSASYGEESETALKRRRTGAAQFGSSQVREDKALKATDTAHGSQVESGPTTTLPDKKLLIFILDRLQKKDTHGVFSEPVDPNDLPDYHVIIQTPMDFGTVRTKLDGGAYANLEQFEEDIFLICSNAMKYNASDTVFFRQARSIQELAKKDFENLRRESSDESEPEQKVVRRGRPPGKSLKKSLGLGNPIESNGAEFCSGATLASGCDDSYNVNGYNLRRARSTFRSLPADPLARTSTAQAQHGETLASWLPEWKNEFPASVLKGVLKSGKNDNMAVNENRRDTYNRSMSCGNWPSVFGDLDGDLKQLITVGLHAEHGYARSLALFAADLGPAVWNIALKKIESISRELGRVLIQEIEMLQHHRLLPLDGGSSDMKAVAETTAVLPCRSISGSNIGVSNNFLKLSEDADNEIDRVRNSESETVLLDRSRDVIGSTTCIPNEQNIIVPSNIHPTNGNLFPHFSQEMRMVRLDSILGGTSCSDYSPCPALNNASFQIPSSSDNTDLLNQAGMPKLAEEVASQSHALRHSPARVYFQDSVDPQQDKHSEKAHWQELSTRPVLDSIAFNPDLNFGLGLSAAPSSNLQILSQIQPDLVLQL 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24477265 24481330 - PI0002941.1 Cmetu07g1520 362001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1520 700 PANTHER BROMODOMAIN CONTAINING PROTEIN 9 699 - -
Cmetu07g1520 700 MobiDBLite consensus disorder prediction 34 61 - -
Cmetu07g1520 700 MobiDBLite consensus disorder prediction 258 277 - -
Cmetu07g1520 700 Gene3D - 156 278 IPR036427 GO:0005515
Cmetu07g1520 700 ProSiteProfiles Bromodomain profile. 172 242 IPR001487 GO:0005515
Cmetu07g1520 700 SMART bromo_6 153 261 IPR001487 GO:0005515
Cmetu07g1520 700 ProSitePatterns Bromodomain signature. 177 234 IPR018359 -
Cmetu07g1520 700 MobiDBLite consensus disorder prediction 1 65 - -
Cmetu07g1520 700 SUPERFAMILY Bromodomain 152 262 IPR036427 GO:0005515
Cmetu07g1520 700 CDD Bromodomain 160 256 - -
Cmetu07g1520 700 MobiDBLite consensus disorder prediction 122 155 - -
Cmetu07g1520 700 MobiDBLite consensus disorder prediction 258 291 - -
Cmetu07g1520 700 PRINTS Bromodomain signature 205 223 IPR001487 GO:0005515
Cmetu07g1520 700 PRINTS Bromodomain signature 223 242 IPR001487 GO:0005515
Cmetu07g1520 700 PRINTS Bromodomain signature 189 205 IPR001487 GO:0005515
Cmetu07g1520 700 Pfam Bromodomain 167 246 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1520 K22184 - - csv:101217603 1216.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2650 Cmetu-Chr1:10965997 Cmetu07g1520 Cmetu-Chr7:24477265 1.60E-56 dispersed
Cmetu01g0350 Cmetu-Chr1:4546689 Cmetu07g1520 Cmetu-Chr7:24477265 6.00E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26