Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1550 ATGGCGGAATTCCTTTGGACTTTCGCAGCGCAAGAACTGTTGAAGAAGACAGTGAAGCTCGTAGCAGAACAGATCGGCCTGGCATGGGGTTTCAAGAATGAGCTCTCAAACCTCAGAGACTCTCTACTTATGGTGGAAGCCATTCTTCGCGATGTTGACAGAATTAAGGCAGAGCATCAAGCTGTGAAGCTATGGGTAGAGAAGCTTGAAGCTATTGTTTTCGAAGTCGATGTTCTACTCGACGAGCTCGCTTACGAAGATCTTCGCCGCAAGGTTGAACCCCAAACAGAGGTGATGGTTAGTAATTTCATTTCTTTCTCCAAAACCCCTCTTGTTTTTCGTCTCAAAATGGCCAATAAAATCAAGAACATTGCTAAGATGTTGGAAAAACATTATTCTGCTGCTAGTACTGTGGGGCTTGTTGCTATATTATCAAAACAAACTGAACCTGATTTTAGCCAAATTCAAGAGACAGATTCGTTTCTTGATGAGTATGGAGTTATTGGGAGAGAAACTGAAGTTTTGGAGATTGTGAATGTATCTGTCGATCTTAGCTATAGGGAGGGTTTGTCTGTTTTGCCAATTGTTGGTATGGGTGGATTAGGAAAAACAGCTTTGGCTAAGGTAATATTCAATCATGAATTGATAAAGGGGAATTTTGATAGAACTATATGGGTGTGTGTTTCAGAACCTTTTCTTATCAAGAAGATTTTAAGAGCAATTTTGGAAACTCTTAATTCTAATTTTGGTGGCTTAGATAGTAAAGAAGCCTTACTTCAAGAGCTACAAAAGTTGTTGAATGACAAAAAGTATTTTCTAGTTCTTGATGATGTTTGGAATGAGAATCCTATCCTTTGGAATGAGTTGAAAGGTTGTTTGTTAAAGATTAACCAAAGATCTGGAAATGTTGTTGTTGTGACTACTAGGAGTGACAGAGTTGCTGAAATCATGGAGACACATTCTAGATATCATTTGACAAAACTATCTGATGACCATTGTTGGTCTTTATTCAAAAAATATGCATTTGGAAATGAATGGCTAGGAATTCCTGAATTGGATATTGTTCAGAAAGAGCTCGTTAAAAGATTTGGCGGTATACCATTGGCTGTAAAAGTGATGGGAGGAATCGTTAAATTTGACGAGAATCATGAGGGATTGCAAAAATCTTTGGAGAATCTAATGAGACTTCAATTGCAAGATGAAAACCACGTTGTATCAACGATAAAGTTAACTGTAGATCGCCTACCATTGTCCTCATTAAAACAATGTTTTGCCTACTGTTCAAATTTTCCAAAAGACTTCAAGTTCAGAAAAGAAGCCCTTATTCAGATGTGGATAGCACAAGGATTTATTCAACCGTCTTTGGGAAGTGATGAAATGATGGAGGATATTGGTGAGAAGTACTTCAATGTTTTGTTGTCTCGCTTCTTGTTTCAAGATATTGTCAAGGATAATAGAGGGAGAATTATATTCTGTAAGATGCACGATCTTATACATGATGTTGCATGTGCTATTTCAAATTCTCAAGGATTGAAATGGGATCCTTCAGATTTGTTGGACGGCGAACCTTGGAGACGTCAAGCTTGCTCTGCTAGCCATAAACTAAGAACACCAGATTGTAATGAAAATCATTCTAGAAAGTTGCACATGTTGACATTTGATAGTCATATGTTTCACAATAAGGTCACAGACTTTATCTACTTGCGGGTTTTAATTGCACATTCGTGGTTTATATGTAAATTACCAAATTCAATTGCTAAGTTGAAGCACTTGAGGTATCTTGACATTTCATATTCTACCATAAGGGAGCTACCAGATTCCGTTGTTTTGCTTTATAATCTGCAAACATTGAAGCTTTCAAGATTTTTTAATGACCTTCCAAAAAATTTGAGGAAGTTGGTTAGTTTAAGACATTTAGAATTTTTCTCTGATCCTTGTAATACTAAACAAATGCCTCAACATTTGGGTAAATTGATTCAACTTCAAACGTTGTCTAGTTTTGTAGTTGGGTTTGATGATGGATGTAAGATAGAAGAGCTCGGATCTTTGAGAAATCTTAAAGGTAAATTAAACCTTTTATGTCTTGAGCGAGTGAAAAGTAAAAAGGAAGCCATGGCTGCAAATTTGGTGGAGAAGGGGAATATTTCAAATCTGTATTTTTATTGGACTTTGAGATGTGAAAGATCAGAAGGAAGCAACTACAATGATTTGAACGTGTTAGAAGGACTTCAACCGCATAAAAATCTTCAAGCTTTGAGAATTCGAAACTTTTTAGTTATCAAAGCTTGA 2289 36.61 MAEFLWTFAAQELLKKTVKLVAEQIGLAWGFKNELSNLRDSLLMVEAILRDVDRIKAEHQAVKLWVEKLEAIVFEVDVLLDELAYEDLRRKVEPQTEVMVSNFISFSKTPLVFRLKMANKIKNIAKMLEKHYSAASTVGLVAILSKQTEPDFSQIQETDSFLDEYGVIGRETEVLEIVNVSVDLSYREGLSVLPIVGMGGLGKTALAKVIFNHELIKGNFDRTIWVCVSEPFLIKKILRAILETLNSNFGGLDSKEALLQELQKLLNDKKYFLVLDDVWNENPILWNELKGCLLKINQRSGNVVVVTTRSDRVAEIMETHSRYHLTKLSDDHCWSLFKKYAFGNEWLGIPELDIVQKELVKRFGGIPLAVKVMGGIVKFDENHEGLQKSLENLMRLQLQDENHVVSTIKLTVDRLPLSSLKQCFAYCSNFPKDFKFRKEALIQMWIAQGFIQPSLGSDEMMEDIGEKYFNVLLSRFLFQDIVKDNRGRIIFCKMHDLIHDVACAISNSQGLKWDPSDLLDGEPWRRQACSASHKLRTPDCNENHSRKLHMLTFDSHMFHNKVTDFIYLRVLIAHSWFICKLPNSIAKLKHLRYLDISYSTIRELPDSVVLLYNLQTLKLSRFFNDLPKNLRKLVSLRHLEFFSDPCNTKQMPQHLGKLIQLQTLSSFVVGFDDGCKIEELGSLRNLKGKLNLLCLERVKSKKEAMAANLVEKGNISNLYFYWTLRCERSEGSNYNDLNVLEGLQPHKNLQALRIRNFLVIKA 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2778975 2782455 + PI0027079.1 Cmetu07g1550 362031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1550 762 Pfam Rx N-terminal domain 11 97 IPR041118 -
Cmetu07g1550 762 SUPERFAMILY L domain-like 493 756 - -
Cmetu07g1550 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 427 IPR027417 -
Cmetu07g1550 762 Gene3D - 154 323 IPR027417 -
Cmetu07g1550 762 FunFam Probable disease resistance protein At1g61300 151 322 - -
Cmetu07g1550 762 Gene3D - 9 125 - -
Cmetu07g1550 762 FunFam Probable disease resistance protein At1g63360 412 504 - -
Cmetu07g1550 762 PRINTS Disease resistance protein signature 363 377 - -
Cmetu07g1550 762 PRINTS Disease resistance protein signature 192 207 - -
Cmetu07g1550 762 PRINTS Disease resistance protein signature 265 279 - -
Cmetu07g1550 762 PRINTS Disease resistance protein signature 586 602 - -
Cmetu07g1550 762 PANTHER DISEASE RESISTANCE PROTEIN RP 35 756 IPR044974 GO:0006952
Cmetu07g1550 762 Gene3D Ribonuclease Inhibitor 530 760 IPR032675 -
Cmetu07g1550 762 Gene3D - 411 504 IPR036388 -
Cmetu07g1550 762 Gene3D - 327 410 IPR042197 -
Cmetu07g1550 762 Pfam NB-ARC domain 184 410 IPR002182 GO:0043531
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1550 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0770 Cmetu-Chr5:1482914 Cmetu07g1550 Cmetu-Chr7:2778975 4.80E-158 dispersed
Cmetu07g1550 Cmetu-Chr7:2778975 Cmetu07g2260 Cmetu-Chr7:2830125 1.00E-195 dispersed
Cmetu07g0256 Cmetu-Chr7:2739974 Cmetu07g1550 Cmetu-Chr7:2778975 3.40E-132 proximal
Cmetu07g1550 Cmetu-Chr7:2778975 Cmetu07g0538 Cmetu-Chr7:2783668 1.80E-293 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1249 . . . . . . . . . . . . . . Sed02g1027 . . Bhi01g02658 Tan10g1276 Cmetu07g1550 . . . Lcy11g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000049 1 17 1 1 1 9 0 11 8 28 9 10 9 18 20 10 9 0 0 9 17 7 7 28 33 20 21 14 7 0 325