Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1629 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAAGGGAAAGGGAAGAGGAAGTGAAGAAGGAAGAAGGTGAAATGAAACCCATGATGCGTGAGGAGGCTTTTGAGAACCAGGATGACTCCGATCGCATTGTGCGAAATGGTGATGATTCTCAAGGGAGTAACCCACTTGCGATTGCTGTTGATGATGTGCCTGAACGCCATGAAGGTGATCGACTTAGATTGTTTGAGGATATGGTCAGAGCAATGCACGATGGCGGCGATGGTGGCGCTCATTGGGATGATGAGCTTCGCGGTGGTGGTGCTGGTGGTGGGGCTATTAATCCCTGGAATCTTTCTTTTGGAATTATGCATCAGTCTGAGGGAGGAGAGAGTAGTAGCGCCTCCGCTTTATCCTTGTCTTCTATGGCGGAGACTTCTATCGAGGAACGCGATCGGGATGCCCACCATAAGCGCGCCAAAGTTCACTCCAAATTCATTGAGAGCTCATTTGCAACTCCATGGCCTTTGGGTGCTGGAAATCCTATGAGAGAGTATGATTTTATTCATGGATCATCCTCAATTATGTCGAGGAATGAATTTCTATACCATGCTTCTACATCAAGCAGAGTTGATGCCGACAAAGATTTGGAATCTAGTTTTGGTAGAGATGATGGGATCAGTGAGAATGACACCTGTAAATCAGAAGGATTTGAAGTAAGGATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAACCTTTGCCGAGCTGCTATAGTTTGCAGGCAGTGGCAAGCTGCTAGTGCTCATGAAGACTTCTGGAGGTGTTTGAATTTTGAAAATAGGAATATATCCATGGAACAATTTGAGGATATGTGTGGAAGATATCCAAATGCCACAGAGGTCAACATCTCTGGTGTACCAGCTGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGAAATCTGGAGGTTCTAACTCTGGGACGAGGACAACTGGCAGATAACTTTTTCCACGCCCTTGCTGATTGCCATTTGTTGAAGAGTCTGACTGTCAATGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCATGACAGACTGCGTCATCTTCATCTTACTAAATGCCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTATCCTTGAAGCGCAGCAACATGGCACAGGCCGTTCTTAACTGCCCCCTTCTTCGCGACCTGGATATAGGCTCTTGTCACAAGCTCTCAGATGCTGCAATTCGCTCGGCCGCAATTTCGTGCCCGCAGTTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTTCTGCAAACTGCCCAAATCTTCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGAATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTAGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTTTCTCTGGATCTTCCTCATTTACAGAATATCAGACTTGTCCATTGCCGCAAATTCTCGGACTTGAGTTTGCAGAGTGTCAAATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCACCGTATCAACATTACTTCCAATTTACTTCAAAAATTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCAAGTCTGCAGGATGTGGACCTCACAGATTGTGAATCTCTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGCGAGAGTTTGACTGCTGTTCGATTCTGTAGCAGTTCTTTAGGCAGTCTTTCCCTTGTTGGTTGCCGAGCAATCACTTCACTTGAACTTCAATGTCCTAATCTTGAACAGGTTTCTCTAGATGGCTGTGATCATCTCGAAAGAGCATCATTTTCCCCGGTTGGTCTGCGGTCTCTAAACCTGGGAATCTGTCCCAAATTGAATGAATTAAAACTTGAGGCCCCTCGTATGGATTTACTTGAGTTGAAAGGTTGTGGTGGATTGTCTGAGGCAGCCATCAATTGTCCTCGTCTAACATCATTGGATGCCTCCTTTTGTGGCCAACTGAAAGATGAGTGTTTGTCTGCAACGACTGCCTCATGTCCCCAGATTGAGTCGTTAATACTGATGTCATGTCCATCGGTTGGTTCGGAGGGACTTTACTCTCTGCGATGCCTTCTGAAGTTAGTTGTGCTCGATTTATCATATACCTTTTTGATGAACTTGCAACCAGTCTTCGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCTTGTAAGTATTTAACTGACTCATCGCTGGAGCCTCTTTATAAGGAAGGTGCTCTTCCAGCTCTTCAAGAGTTAGATTTATCTTACGGGACACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACACTTGACTCATGTGAGCTTAAATGGGTGTGTGAACATGCACGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCGTTGTCCGGCATCCCAATTCCTCTTGGTCAGACCACTTTTGATGAGATCGAGGAACCAGTTGCACAGCCAAACCGTTTGTTACAGAACCTTAACTGTGTAGGTTGTCAGAATATCAGAAAGGTTCTCATTCCTCCAGCTGCACGTTGTTTTCACTTATCATCATTAAACCTATCACTGTCGTCGAATCTCAAGGAAGTTGACGTTTCTTGTTACAACCTATGTGTTCTCAACTTGAGTAATTGTTGCTCTTTGGAAGTTTTGAAACTCGACTGCCCGAGGTTGACCAGTCTCTTTCTTCAGTCTTGCAACATCGAGGAAGAAGTGGTTGGAGCTGCGGTATCGAAATGTAGCATGCTTGAGACGTTGGATGTCCGCTTTTGTCCAAAGATCTCCTCAATTAGCATGGTACAACTGCGTATTGCTTGCCCAAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGA 3132 43.71 MTIWCCLCFTVGEEEEEEEEDEREREEEVKKEEGEMKPMMREEAFENQDDSDRIVRNGDDSQGSNPLAIAVDDVPERHEGDRLRLFEDMVRAMHDGGDGGAHWDDELRGGGAGGGAINPWNLSFGIMHQSEGGESSSASALSLSSMAETSIEERDRDAHHKRAKVHSKFIESSFATPWPLGAGNPMREYDFIHGSSSIMSRNEFLYHASTSSRVDADKDLESSFGRDDGISENDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRNLEVLTLGRGQLADNFFHALADCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREISANCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSSLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELKLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMNLQPVFESCIQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSGIPIPLGQTTFDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCVLNLSNCCSLEVLKLDCPRLTSLFLQSCNIEEEVVGAAVSKCSMLETLDVRFCPKISSISMVQLRIACPSLKRIFSSLSPT 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23574730 23582528 + PI0019853.1 Cmetu07g1629 362110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1629 1043 Coils Coil 11 35 - -
Cmetu07g1629 1043 FunFam F-box/LRR-repeat protein 15 239 489 - -
Cmetu07g1629 1043 Gene3D Ribonuclease Inhibitor 802 1042 IPR032675 -
Cmetu07g1629 1043 Gene3D Ribonuclease Inhibitor 285 412 IPR032675 -
Cmetu07g1629 1043 MobiDBLite consensus disorder prediction 27 57 - -
Cmetu07g1629 1043 MobiDBLite consensus disorder prediction 11 26 - -
Cmetu07g1629 1043 MobiDBLite consensus disorder prediction 129 148 - -
Cmetu07g1629 1043 Gene3D - 242 284 - -
Cmetu07g1629 1043 SUPERFAMILY F-box domain 246 277 IPR036047 GO:0005515
Cmetu07g1629 1043 SMART LRR_CC_2 419 444 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 601 626 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 734 759 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 861 890 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 471 491 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 445 470 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 760 785 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 671 701 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 808 833 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 1004 1029 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 629 667 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 538 563 IPR006553 -
Cmetu07g1629 1043 SMART LRR_CC_2 492 517 IPR006553 -
Cmetu07g1629 1043 CDD F-box_FBXO41 249 285 - -
Cmetu07g1629 1043 MobiDBLite consensus disorder prediction 11 67 - -
Cmetu07g1629 1043 FunFam F-box/LRR-repeat protein 15 801 886 - -
Cmetu07g1629 1043 PANTHER OS10G0396666 PROTEIN 228 1042 - -
Cmetu07g1629 1043 Gene3D Ribonuclease Inhibitor 413 564 IPR032675 -
Cmetu07g1629 1043 MobiDBLite consensus disorder prediction 129 158 - -
Cmetu07g1629 1043 SUPERFAMILY L domain-like 416 773 - -
Cmetu07g1629 1043 SUPERFAMILY L domain-like 728 1037 - -
Cmetu07g1629 1043 SMART fbox_2 247 287 IPR001810 GO:0005515
Cmetu07g1629 1043 Pfam F-box-like 249 288 IPR001810 GO:0005515
Cmetu07g1629 1043 Gene3D Ribonuclease Inhibitor 720 801 IPR032675 -
Cmetu07g1629 1043 Gene3D Ribonuclease Inhibitor 565 690 IPR032675 -
Cmetu07g1629 1043 SUPERFAMILY RNI-like 267 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1629 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42