Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1738 ATGGCGGACCATTCACATGAGGGTTCCAGCACCAGCAGTAATTCCGGCGAGCCTGGAACTTCCATTATTGAGCTGAACATTAAGACTTTAGATTCACATATCTACAGTTTTCACGTGAATAAAGATATGCCAGTTCAATTATTCAAGGAGAAAATCGCAAATGAAATAGGAATCCCAGTGAATCAGCAACGTTTGATATTCAGGGGAAAGGTTCTAAAGGATGAATGTTCGCTTTCTGAATATTATTTGGAAAATGGACATACATTGCATTTAGTTGAAAGGCAACCAACTCAGCAGCATGCACCATCTGAAAGTAGCTCCGGTGACAGACCAGGGAATGTGCCTTCATCAACCGGTAGCGAAACTGGAGTTGGTGCCCCTCGAAATCGTGTTGGACAAATTGCACATAGTGTGGTTTTAGGAACATTTAACGTTGGGGATCAAGGTGAAGGAATTGTTCCTGATCTTTCACGGGTTATTGGGGCAGTTCTGAATTCTATTGGACTAAGCGGTCAAAATACAAACATCCCTACTGGTATGCAGTCTACAGGGCCTAACCATCGTGGAACAGCAAATCAAGGAAATGAAACATTTAGAGCTAATAATGGGGTTGGAGGACAAGCAACAAGTCAGGCTCAAACCGGACAGGCATTTCCCGGCCAACCATCACAAAGTTTTCCTCATGTGATTCAAATTCCACTTGCCAGTGCAGCTGTATCAGTTCCTTCCATTCATTCGCCCATTCCTGATTCTATGACAACACTTTCTGAGTTCATGAACCGTATGGAGTTAGCAATATCTCAGAATGGCGGAGATCTAACCAGGGTGGAACTGCCTACCAATCCCCAAGGTTTGCCAACCACTGAATCTTTGAGCATTGTCTTGCGTCATGCTCAACGGCTTCTAAGTGATTATGCCATATCTTCACTATCTCGTATTGCTGAGCGTTTGGAGCAAGATAGCTCTTCCACTGATCCTACTGTGAGGGGTCAAATTCAGGAGGAGTCGGTACAAGTAGGACTTAGGATGCAACAATTTGGTGCCCTTCTTCTGGAACTGGGCCGTACAATCTTGACACTCCGCATGGGGCAGTCACCTGCTGAGTCAGTTATTAATGCTGGCCCCGCAGTGTATATCTCTCCTATGGGGCCAAATCCCTTAATGGTTCAGCCTTTCCCCCTTCAAACTAATTCTCTCCTGGGTGGTGCTGTACTACCATCAAACCCAGTTTCTGTCGGTGCAGTTGGTATTGGAACTGCCCCTAGGCACATCAACATTCACATACATGCCGTTGGTACTAGGTCCAATAATGGGGAGGGTGCACCTGCAGAGCGTCAGAATGTGGTCAGTGGACCTACGGATTCAGGTGTAGCACAGGCACCTCCTGTTGTCAACATTCCACATCCACTAGGCGTTTCGATTTCTGCTGCTGTGCAACCTGGTGAAGGTGTTTCTTTTTCCCAGCCTTCTCCTGATTCCGTTTCATTATCCTCCATAATTGCTGATGTCAATTCACGAATTAGAGATTTAGTTGGTAATGTTGGAGGTGGTAGCCCTACTGAATCAGGTCAAGTGCAAACAGCAGTTCAGAATTCTTCTAGTGGTTCTGGACAAGAGAGTGAACAGCGCAGTGATACGAAAAGGGACATGGGTGGAGAGTCGAGTGAGTCATTACATACGCACAACCCAGAAAATGGAATTGACAAGATTGTAAACCCAGACACTATTTGTCGAGATACAGGGGCTGTAAACCCACCGGATTTACCAACATGCTCTGGTGGTAGAGGATCTGAATTTGTTGGAAGAAATGAAGAAAATTTTCAAAGTCAGGCATCTTGTGAGAAGAGCACGGGAACAGGGCCTTCTCAAACTGTTCCGCTTGGACTTGGACTGGGGGGTTTGGAACGACCGAGGCGAGGCAGGCAGCAAAGTTCGCAGGCTAAAGGGGGTAGCAGCGGAACCAGCCACAGCCAGGGCCCTACAGGTCAGCAGATTTTACAACCTCTTGCCTCCAGTGCTTCCATGAATAAGTCAAATGCTCGTGAACCATCCTCAGGCCTACATTTGACTGCTAGCCCGACTGTGGCTGGCAGATCCTTGCATGGGTCAGGTTCTGACGGCCAAATTGATCTGGGAAGCAGTATGTCTCAAGTTTTGCAGAGTCCTGCTTTGAATGGCCTATTGACAGGGCTTTCAGAGCAAGCTGGCGTTGGTTCTCCTGATGTTTTGAGGAACATGTTGCAACAGCTCACGCAAAGCCCTCAGATGAGAAACACAGTCAATCAAATTGCTCAGCAGGTTGACCCTCAAGAGATTGAGCACATGTTTGCTGGGTCAGGAAGAGGCCAAGGTGGTGGAATCGATTTGTCCAGGATGTTCCAACAGATGATGCCCATCGTCTCTCAAGTGCTTGGAGGAGGGCCAATGCAACCGTCTTCCTCTAGCATGAACAGAGAGCCAAGGCAACCACCTTCGTCAAACCTGGAAAGAGAGCCAACGCCTCATAGCGAGAGGTCTGGTAGTGGGGTGGAAACATCAAATGATCCAAATTTTCAGATCGACTCCCAAGATCTTGCTCGAAGGATCACTTCTACCAATTCGCCAAGGGACGTCTTCCGTGCTGTAGTTGAAAGCTCAGCTCGGCTTTCTGGCAGTAGTAGCGAAGATATCGCAAATGAGTTGTGCAGCGATGAGAGACTTGCTAAGGAATATGTAGAGATGTTATCCAGTGATGTAAACCGACGGTTACAAGGCAATTCAGATCAGGAAAAGTAA 2775 47.14 MADHSHEGSSTSSNSGEPGTSIIELNIKTLDSHIYSFHVNKDMPVQLFKEKIANEIGIPVNQQRLIFRGKVLKDECSLSEYYLENGHTLHLVERQPTQQHAPSESSSGDRPGNVPSSTGSETGVGAPRNRVGQIAHSVVLGTFNVGDQGEGIVPDLSRVIGAVLNSIGLSGQNTNIPTGMQSTGPNHRGTANQGNETFRANNGVGGQATSQAQTGQAFPGQPSQSFPHVIQIPLASAAVSVPSIHSPIPDSMTTLSEFMNRMELAISQNGGDLTRVELPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPTVRGQIQEESVQVGLRMQQFGALLLELGRTILTLRMGQSPAESVINAGPAVYISPMGPNPLMVQPFPLQTNSLLGGAVLPSNPVSVGAVGIGTAPRHINIHIHAVGTRSNNGEGAPAERQNVVSGPTDSGVAQAPPVVNIPHPLGVSISAAVQPGEGVSFSQPSPDSVSLSSIIADVNSRIRDLVGNVGGGSPTESGQVQTAVQNSSSGSGQESEQRSDTKRDMGGESSESLHTHNPENGIDKIVNPDTICRDTGAVNPPDLPTCSGGRGSEFVGRNEENFQSQASCEKSTGTGPSQTVPLGLGLGGLERPRRGRQQSSQAKGGSSGTSHSQGPTGQQILQPLASSASMNKSNAREPSSGLHLTASPTVAGRSLHGSGSDGQIDLGSSMSQVLQSPALNGLLTGLSEQAGVGSPDVLRNMLQQLTQSPQMRNTVNQIAQQVDPQEIEHMFAGSGRGQGGGIDLSRMFQQMMPIVSQVLGGGPMQPSSSSMNREPRQPPSSNLEREPTPHSERSGSGVETSNDPNFQIDSQDLARRITSTNSPRDVFRAVVESSARLSGSSSEDIANELCSDERLAKEYVEMLSSDVNRRLQGNSDQEK 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24332844 24342980 - PI0016715.1 Cmetu07g1738 362219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 95 127 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 639 711 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 806 830 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 1 20 - -
Cmetu07g1738 924 PRINTS Ubiquitin signature 75 96 IPR019956 -
Cmetu07g1738 924 PRINTS Ubiquitin signature 54 74 IPR019956 -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 511 711 - -
Cmetu07g1738 924 Gene3D - 11 108 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 838 854 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 95 124 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 439 454 - -
Cmetu07g1738 924 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 8 922 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 183 223 - -
Cmetu07g1738 924 SMART ubq_7 23 94 IPR000626 GO:0005515
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 517 540 - -
Cmetu07g1738 924 SUPERFAMILY Ubiquitin-like 9 110 IPR029071 -
Cmetu07g1738 924 ProSiteProfiles Ubiquitin domain profile. 23 98 IPR000626 GO:0005515
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 803 854 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 433 456 - -
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 541 555 - -
Cmetu07g1738 924 Pfam Ubiquitin family 25 95 IPR000626 GO:0005515
Cmetu07g1738 924 MobiDBLite consensus disorder prediction 602 624 - -
Cmetu07g1738 924 FunFam Large proline-rich protein BAG6 15 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1738 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g0998 Cmetu-Chr6:30662856 Cmetu07g1738 Cmetu-Chr7:24332844 1.30E-08 dispersed
Cmetu07g0109 Cmetu-Chr7:24329970 Cmetu07g1738 Cmetu-Chr7:24332844 6.60E-18 tandem
Cmetu05g0166 Cmetu-Chr5:1848101 Cmetu07g1738 Cmetu-Chr7:24332844 3.00E-56 transposed
Cmetu01g0562 Cmetu-Chr1:4590925 Cmetu07g1738 Cmetu-Chr7:24332844 1.50E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g547 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g2452 . . . . . . . . Bhi09g02931 Tan01g5081 Cmetu07g1738 . . Mch11g0072 . . . . . . . . . . . Cme07g00072
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007185 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 36