Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu07g1748 ATGGCGTCTCTTTCTTCAATAATGCTTTTCTTTGCTTTTTCTTTCCTTTTCTTTCAATCTTTCGCCGGAAAAATCTCGCCGGACTCCCACTACCTCACCGTCGAACTCACCGACCTTTTCCCCTCCGCCTCCTGCACCCGCCGCTCCCCTCAAGCCTATACATCAAGTCTGGGAGAGCAGTCATCACTGGAGGTGATTCACCGGCACGGCCCATGCGGCGACGGAGTTTCAAAAGCTCCGACGGAAGCCGAAACGTTGGTGCATGATCAGGCTCGAGTGGATTTCATCCACTCTAAATTCGCAGCGGAGCTCGAATCCGTTGACCGTCTACGACCGTCGAAGGCCACAAAAATTCCGGCAAAGTCCGGCGCGACGATCGGGTCCGGCAACTACATAGTGAACGTGGGTTTAGGAACGCCGAAGAAATACTTGTCGCTTATATTTGACACCGGCAGCGATTTGACGTGGACTCAATGTCAGCCTTGTGCTAGATATTGCTACAACCAGAAAGAACCTGTTTTTGATCCTTCTCAATCCACCACTTATTCCAATATCTCTTGTTCTTCGCCGGATTGCTCCCAGCTTGAATCAGGCACAGGGAACCAGCCTGGTTGCTCCGCCGCAAGAGCTTGCATTTACGGAATACAATACGGCGATCAATCTTTCTCTGTTGGATATTTCGCCAAAGACACCCTAACCTTAACCTCAACTGACGTTATAGATAATTTCCTCTTCGGTTGCGGCCAAAACAACCGTGGACTCTTCGGCAGCGCCGCCGGTCTCATCGGCCTTGGCCAGGACAAAATCTCCATCGTCAAACAAACCGCACAAAAGTACGGTCAGGTCTTCTCCTACTGCCTCCCTAAAACTTCCAGTTCCACCGGCTACTTAACCTTCGGCGGCGGCGGCGGTGGTGGCGCTCTTAAATACACGCCGATCACAAAAGCACACGGCGTTGCAAATTTCTACGGCGTCGACATCGTAGGCATAAAGGTTGGCGGAACTCAAATTCCGATTTCTTCGTCGGTATTCTCGACCTCCGGTGCGATCATCGATTCCGGTACGGTTATCACACGGCTGCCACCGGATGCGTACAGCGCCTTGAAATCAGCGTTTCAGAAAGGAATGGCGATGTATCCGAAGGCGCCAGAGCTTTCGATTTTGGACACGTGTTACGATCTGAGCAAATACTCCACCATAAAGATCCCGGTAGTGGTGTTTGTGTTTAAAGGAGGAGAAGAACTCGTTTTGAGCGGCATCGGAACGTTGTACGGAGGATCAACGTCGCAGGTGTGTTTGGCGTTCGCCGGAAATCAAGATCCGAGCACCGTCGCCATTATCGGAAATGTGCAACAGAAGACTCTGCAAGTGGTTTACGATGTCGGTGGAGGAAAAATTGGGTTTGGTTATAATGGTTGTTAG 1422 50.98 MASLSSIMLFFAFSFLFFQSFAGKISPDSHYLTVELTDLFPSASCTRRSPQAYTSSLGEQSSLEVIHRHGPCGDGVSKAPTEAETLVHDQARVDFIHSKFAAELESVDRLRPSKATKIPAKSGATIGSGNYIVNVGLGTPKKYLSLIFDTGSDLTWTQCQPCARYCYNQKEPVFDPSQSTTYSNISCSSPDCSQLESGTGNQPGCSAARACIYGIQYGDQSFSVGYFAKDTLTLTSTDVIDNFLFGCGQNNRGLFGSAAGLIGLGQDKISIVKQTAQKYGQVFSYCLPKTSSSTGYLTFGGGGGGGALKYTPITKAHGVANFYGVDIVGIKVGGTQIPISSSVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMAMYPKAPELSILDTCYDLSKYSTIKIPVVVFVFKGGEELVLSGIGTLYGGSTSQVCLAFAGNQDPSTVAIIGNVQQKTLQVVYDVGGGKIGFGYNGC 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23810341 23815638 - PI0021203.1 Cmetu07g1748 362229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu07g1748 473 Pfam Xylanase inhibitor C-terminal 323 468 IPR032799 -
Cmetu07g1748 473 FunFam Aspartyl protease AED1 108 300 - -
Cmetu07g1748 473 Gene3D Acid Proteases 305 473 IPR021109 -
Cmetu07g1748 473 PANTHER ASPARTYL PROTEASES 42 467 IPR001461 GO:0004190|GO:0006508
Cmetu07g1748 473 Pfam Xylanase inhibitor N-terminal 131 301 IPR032861 -
Cmetu07g1748 473 ProSiteProfiles Peptidase family A1 domain profile. 131 469 IPR033121 -
Cmetu07g1748 473 FunFam Aspartyl protease AED1 304 473 - -
Cmetu07g1748 473 SUPERFAMILY Acid proteases 125 473 IPR021109 -
Cmetu07g1748 473 PRINTS Pepsin (A1) aspartic protease family signature 445 460 IPR001461 GO:0004190|GO:0006508
Cmetu07g1748 473 PRINTS Pepsin (A1) aspartic protease family signature 137 157 IPR001461 GO:0004190|GO:0006508
Cmetu07g1748 473 PRINTS Pepsin (A1) aspartic protease family signature 349 360 IPR001461 GO:0004190|GO:0006508
Cmetu07g1748 473 CDD cnd41_like 130 473 IPR033873 -
Cmetu07g1748 473 Gene3D Acid Proteases 107 300 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu07g1748 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1082 Cmetu-Chr1:26676230 Cmetu07g1748 Cmetu-Chr7:23810341 3.90E-77 dispersed
Cmetu07g1748 Cmetu-Chr7:23810341 Cmetu10g1611 Cmetu-Chr10:20253710 4.50E-61 dispersed
Cmetu07g1748 Cmetu-Chr7:23810341 Cmetu02g0941 Cmetu-Chr2:22827715 4.30E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g614 . . . Bda03g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00099 . . Sed05g1816 . . . . . . . . Bhi09g03045 Tan01g3527 Cmetu07g1748 . Hepe01g1942 Mch11g0478 . . . . . . . . . . . Cme07g00147
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36